Reverse Dependencies of dnaio

The following projects have a declared dependency on dnaio:

• bolero — sequence
• cemba-data — Pipelines for single nucleus methylome and multi-omic dataset.
• coralsnake — Transcriptome mapping utils
• cutadapt — Adapter trimming and other preprocessing of high-throughput sequencing reads
• cvmtrans — Transposon data process
• dreem — DREEM solves RNA structure ensembles using chemical probing data
• fastq-filter — A fast FASTQ filter progam.
• fastq-handler — A python module to process minion fastq files by concatenating reads as they are generated
• fba — Tools for single-cell feature barcoding analysis
• filter-illumina-index — Filter a Illumina FASTQ file based on index sequence
• hostile — Accurate host read removal
• hostile-eit — Accurate host read removal
• kindel — Indel-aware consensus from aligned BAMs
• mapping-length-analysis — Analyse number of raw and mapped reads by length
• mineer — Automated sequence truncation algorithm
• openst — The computational pipeline for the Open-ST method.
• plasmidsaurus-helper — A convenience tool for identifying low-confidence bases and reindexing fasta files from nanopore plasmid sequencing tools such as plasmidsaurus, full circle etc
• ribocutter — Design oligos to produce sgRNAs for abundant sequences in a fastq file
• seqsum — Robust individual and aggregate checksums for nucleotide sequences
• ultraplex — fastq demultiplexer