| Path |
Digest |
Size |
| dnachisel/Location.py |
sha256=2KJEBiqTDa7HbUjFTTGEnqteA2cNorXFn4BMNkZGmBs
|
6570 |
| dnachisel/__init__.py |
sha256=yPyxeeqNLQYJ23W-LMnO7qoRhZvqGntV7JFVKOChxPw
|
3104 |
| dnachisel/version.py |
sha256=75qJ8NqOBtbt4mF5oAUfGUVujVNxXyGqjsTfZ8wv0rE
|
23 |
| dnachisel/DnaOptimizationProblem/CircularDnaOptimizationProblem.py |
sha256=STjjQePJqOowlINryS3MWL1sSdqX1Hv7ozud4q7fj6Y
|
7668 |
| dnachisel/DnaOptimizationProblem/DnaOptimizationProblem.py |
sha256=dyRuykqGzuGvt9EfTyUW4wfYMwDTE5z7_pFLn4h8dOg
|
9409 |
| dnachisel/DnaOptimizationProblem/NoSolutionError.py |
sha256=V8t5wfh7ZIY4AyO4PEDb7TQZ-6l4E2MdC1CPwOqbVYc
|
500 |
| dnachisel/DnaOptimizationProblem/__init__.py |
sha256=-fhEvaH86zUMQbRxEaXMau6BaeNTpNNkCvrLZ_kk7AQ
|
284 |
| dnachisel/DnaOptimizationProblem/mixins/ConstraintsSolverMixin.py |
sha256=ohOWo6VeRk1xbxEF6BmWxo9gBjrgy95tSlzJHQQNocc
|
15803 |
| dnachisel/DnaOptimizationProblem/mixins/ObjectivesMaximizerMixin.py |
sha256=zdt3dwZW0OLRCYJftyu0h4m01hT8cgvTNh6HAaUPHWI
|
8618 |
| dnachisel/DnaOptimizationProblem/mixins/RecordRepresentationMixin.py |
sha256=tnk-Gefh1go4rVKgOmemocW2T8rDbourkntIaQYcbSA
|
7154 |
| dnachisel/DnaOptimizationProblem/mixins/__init__.py |
sha256=ytSMvFqwjElTAI7IodN6i069kpMGieOz4gsbjLNFjkQ
|
296 |
| dnachisel/MutationSpace/MutationChoice.py |
sha256=TeYKitgPEMNQ6eYbnJmVlhsLAj5bFat2BWfopoGoFOw
|
5118 |
| dnachisel/MutationSpace/MutationSpace.py |
sha256=rOneUhexHRKPOeZe1EbzFvOeZ8uH4bdKAShoxLhRpF8
|
10656 |
| dnachisel/MutationSpace/__init__.py |
sha256=U5qdf_Bn1cST9yjPFo1nhMLK7nS2wFEiBeB69tiPOy0
|
131 |
| dnachisel/SequencePattern/DnaNotationPattern.py |
sha256=es_AfPDzSs1UGkVhY2nmM6ZDvtEiZb4_KRT9Ch1jFOA
|
1781 |
| dnachisel/SequencePattern/EnzymeSitePattern.py |
sha256=8uJj1vhhd53Mz6--uNBj1Q1_otB35szxCyrmMEa-0bU
|
932 |
| dnachisel/SequencePattern/HomopolymerPattern.py |
sha256=T-BvB-dHl-I7Ru8jou4yeKLhopN2D4zHTg-y6EgsFoY
|
828 |
| dnachisel/SequencePattern/MotifPssmPattern.py |
sha256=-a8Eq-AI1gVWadnXebGOSw1Om2k1H_TLs-JzoN8uMUE
|
7887 |
| dnachisel/SequencePattern/RepeatedKmerPattern.py |
sha256=6z9OdrtX-BPMphMIL-JUORaAcE9eb9u5-b1R9-AHyew
|
1112 |
| dnachisel/SequencePattern/SequencePattern.py |
sha256=nGVOHRu3rELK2SpKDAMSDPp0GFQKEY-1N-qC0Hdo4YE
|
5840 |
| dnachisel/SequencePattern/__init__.py |
sha256=_WFlD4Tfno6tM5Y5qTyjsGwVCK0-bXMydxdtF92yuFY
|
613 |
| dnachisel/Specification/FeatureRepresentationMixin.py |
sha256=uAG9ZCm4wGwiI1-_k7iSUJ7_I7pbCLEDS9K5aMa0ay8
|
6223 |
| dnachisel/Specification/Specification.py |
sha256=c4DuCBgTlNGkmTm-MMh7W7u1OhhZLAjV1z5TaOufBGs
|
8923 |
| dnachisel/Specification/SpecificationSet.py |
sha256=5mm6EtLI5oOTQ568PPJ8w_hsQ79F5olAoMX1whB7qXA
|
567 |
| dnachisel/Specification/__init__.py |
sha256=bvgtnZyl5f8bcPwf5FxBAQeu6t0ANX1vYcaunt9xSCo
|
130 |
| dnachisel/Specification/SpecEvaluation/ProblemConstraintsEvaluations.py |
sha256=O5p5IGki_INjImARzGNL0s_7atC_uEuwp07ZAHZ34Z4
|
1727 |
| dnachisel/Specification/SpecEvaluation/ProblemObjectivesEvaluations.py |
sha256=AauP_wbA3w3FfmuaGm2yUCPaY5VTDeHNIgaQczR7DJI
|
1152 |
| dnachisel/Specification/SpecEvaluation/SpecEvaluation.py |
sha256=eQcks0lsePM7I4tvUwXOVEP0Q_QyBL5se38bw7pN6_Y
|
5448 |
| dnachisel/Specification/SpecEvaluation/SpecEvaluations.py |
sha256=Zp9Hq909Ki0_p6ijuZ1tZwFK1-3Konc1P1MTzERtmRg
|
6625 |
| dnachisel/Specification/SpecEvaluation/__init__.py |
sha256=PR2TMOoMgx4e3JB7IlUYo0K0Sy4K_m1CjH2xLZ5FnCY
|
364 |
| dnachisel/biotools/__init__.py |
sha256=WqlJq8vloQsF38m5EAUddfGGUFra8eqwp1IS0eH4KBc
|
2208 |
| dnachisel/biotools/biotables.py |
sha256=89_3Eq0GCZ07v7uUBXJp-R5-tPeg7bKOuWaRY-dKRu0
|
2444 |
| dnachisel/biotools/blast_sequence.py |
sha256=q297JQR6BDxS7kWPLlPfs_SJj00ErHUXs0OZmyGwvmk
|
2970 |
| dnachisel/biotools/bowtie.py |
sha256=p2ai1E3mFEwUkMbn2pAdVJEQXVCzhj1mApaisYRdmok
|
2537 |
| dnachisel/biotools/enzymes_operations.py |
sha256=7A5tDDYTWqsoIu4ZDZTVq3GXgM6peqjHdk3l2tGr07I
|
1491 |
| dnachisel/biotools/formatting_operations.py |
sha256=BiIqblM3ONlDlPYKyPzzqW9DIwZqMRsQQMaKeELxotg
|
1378 |
| dnachisel/biotools/gc_content.py |
sha256=IsHQjqpfn2k7A2WOJ_dCBupUvZRLAODEFfE1vAMsdeE
|
1211 |
| dnachisel/biotools/genbank_operations.py |
sha256=g4ExrxacubZeBScmLHGOncpa51ENFSVGyQa3FV6cdI4
|
7202 |
| dnachisel/biotools/indices_operations.py |
sha256=iVoaAqFrd12CccUNrQNIPxUKPUEkGhdkZRWcXrj8w1E
|
3114 |
| dnachisel/biotools/random_sequences.py |
sha256=96GHHlMb-ai6OF_yDAfBtOI7tzDhPgBSKOTlJmzsoFc
|
2028 |
| dnachisel/biotools/sequences_differences.py |
sha256=7JkJY2Gabx5MIjZ5sT-2Vlw5Q2tSLGlCcyZA-_cfyxQ
|
1280 |
| dnachisel/biotools/sequences_operations.py |
sha256=rxevTGBS2wfO1Je2PtpqRY4AHwRBETFGOTFaNZIeRdQ
|
3810 |
| dnachisel/biotools/data/README.md |
sha256=MyS3AwqIuYcR2j8f_H_xoMlsGC8zHFiZzzBu7-pyZR8
|
470 |
| dnachisel/biotools/data/complements.csv |
sha256=dJbngOyKH3vaOgLUJjzl-6KxMQx6jYKLkxlxdsU7aMQ
|
68 |
| dnachisel/biotools/data/iupac_notation.csv |
sha256=D-y6PMVlEg21eVlOKv-nhMehhdZDTb3ig3VjARw_cQU
|
81 |
| dnachisel/biotools/data/nucleotide_to_regexpr.csv |
sha256=4JAaReJBrGEeA03S_QJj7wwD6pN_5gmGqy41ryQ_2kE
|
132 |
| dnachisel/builtin_specifications/AllowPrimer.py |
sha256=5PfYVpr7799JLU5NVGXBJEYdtWZLUPHcV4kGpdotJRI
|
3184 |
| dnachisel/builtin_specifications/AvoidBlastMatches.py |
sha256=b88FiUbArXuXLFpOjdIVlGYpBcPz2FXS7lvK4SWOLj4
|
4711 |
| dnachisel/builtin_specifications/AvoidChanges.py |
sha256=3JsFxeXYXmgVCz6kbERW4SdESF6CumQFWf9i3KQ4JRg
|
6509 |
| dnachisel/builtin_specifications/AvoidHairpins.py |
sha256=rUo-LdkFrTZ6VT2TlgF3PGW1Z2uUkeoZ9kFm2oldQBw
|
3320 |
| dnachisel/builtin_specifications/AvoidHeterodimerization.py |
sha256=vCKpf1d8Z1tOBt_XArfOYg8HwHtT0IK-dyYYwMwg06s
|
2623 |
| dnachisel/builtin_specifications/AvoidMatches.py |
sha256=AtqixkPtLKUKtyl9Xw4HA7YcFw66qQPJ7cnFsxML-pA
|
4860 |
| dnachisel/builtin_specifications/AvoidPattern.py |
sha256=Pc0_LwKID9U3JTzA2ItGR19WMZJAZVz6Ua582QTjU8c
|
4184 |
| dnachisel/builtin_specifications/AvoidStopCodons.py |
sha256=A4Qd9UpfbvdeGswrv6HHsizWXp8kg194D5DZdPwOKmQ
|
1970 |
| dnachisel/builtin_specifications/CodonSpecification.py |
sha256=fxcQrIRApTbD6FVL7y1VtnQF-kBXfKDGYFXFxf5zk_M
|
2342 |
| dnachisel/builtin_specifications/EnforceChanges.py |
sha256=uqH7V9a_RvHQLH06o1jVFJyIwDcu1q1D5OiK_z1xHSs
|
11935 |
| dnachisel/builtin_specifications/EnforceChoice.py |
sha256=ADo9oippaAEhN4veCuxgjsWfw4ZaPyBY5XdY8kZbkUA
|
3293 |
| dnachisel/builtin_specifications/EnforceGCContent.py |
sha256=NPfV_RGg7rmENN2vt82KXQ5_QfYCiVbkD63QHPFr-88
|
7071 |
| dnachisel/builtin_specifications/EnforceMeltingTemperature.py |
sha256=fKNIH85ih_iFmEyIxmu7VJndRGikCCQTo72-ahfVW5E
|
2546 |
| dnachisel/builtin_specifications/EnforcePatternOccurence.py |
sha256=G_e1oR77PdVbOdatldPocH8obQt2R9Mk0XPDLtvXKrM
|
8075 |
| dnachisel/builtin_specifications/EnforceRegionsCompatibility.py |
sha256=dDC5yJztUhbZ2EoDuzLJepn7SseD4QKQbke2X4D_wQY
|
2515 |
| dnachisel/builtin_specifications/EnforceSequence.py |
sha256=-_YS9_MT4fuDnh_hBPFVB0dlC7purWfgJjWhWZ0c7fI
|
4627 |
| dnachisel/builtin_specifications/EnforceTerminalGCContent.py |
sha256=8GxY9lqw4Kh1KANYkMrcuTm1AJk6KCpqlEOZLC38NsA
|
1108 |
| dnachisel/builtin_specifications/EnforceTranslation.py |
sha256=hG5u8B-sdgB6Cv_i9tpmn39qlpkjfHCS584nGutLGDQ
|
8936 |
| dnachisel/builtin_specifications/SequenceLengthBounds.py |
sha256=536RhPzW0iKAfQD8zbZu8y16vuEIxIEs1ZW2f8MRtVs
|
1194 |
| dnachisel/builtin_specifications/TerminalSpecification.py |
sha256=j2znB-PENXXjBRB5ke67E3pLdnUBFsrqXHfCB6uPdTE
|
2176 |
| dnachisel/builtin_specifications/UniquifyAllKmers.py |
sha256=tM6kYfwZklgItPvFHFZJbclCPntk0ifZI3c8MpFy9QQ
|
11009 |
| dnachisel/builtin_specifications/__init__.py |
sha256=RDyrEsZ82M-T70o3j6q8rQXvDqQ7AVjpuwEw-scXazk
|
2693 |
| dnachisel/builtin_specifications/codon_optimization/AvoidRareCodons.py |
sha256=OjsB4vjUSQgZnN8-OhFI4sxnajY3ExU7Y21oXtIpKqI
|
4969 |
| dnachisel/builtin_specifications/codon_optimization/BaseCodonOptimizationClass.py |
sha256=wRhG60E1s2qTOeAgKDTkZBFvBSLjcEQSN8HB8ARKvlQ
|
3377 |
| dnachisel/builtin_specifications/codon_optimization/CodonOptimize.py |
sha256=iZjSVjh3-4Vuv_0siernfvBN6Q548gnoI2-uzP5_RVE
|
4479 |
| dnachisel/builtin_specifications/codon_optimization/HarmonizeRCA.py |
sha256=qoifREvAaHIcrjPhtUPKtk1n_ZubwK8R4rhWxZbqg8Y
|
6754 |
| dnachisel/builtin_specifications/codon_optimization/MatchTargetCodonUsage.py |
sha256=yuDDvWu3mJrZAUYomWX9rqWdQM0so5eU03yFDd5HCmU
|
8154 |
| dnachisel/builtin_specifications/codon_optimization/MaximizeCAI.py |
sha256=3Of_SlnSMHQIxUMxpH_IBiN5hdswaSZn28VNuRaBMV0
|
5427 |
| dnachisel/builtin_specifications/codon_optimization/__init__.py |
sha256=1rsnWSKCzHD5i3c5FJQe8axlvVbx2h47v79AWdDO92Y
|
346 |
| dnachisel/reports/SpecAnnotationsTranslator.py |
sha256=c0IK71U5K96eSHzVyDcuznEcbPeQDG1vsUp5NFL_pL8
|
1835 |
| dnachisel/reports/__init__.py |
sha256=ikm3Lz_hNbJA-T5ZJ30A_ItPF8SS47OPPrDB3aeO9yY
|
315 |
| dnachisel/reports/colors_cycle.py |
sha256=q3vNzV1mGnsAnzu1nS79IAakm35oiOpMCutjwQ26wb8
|
826 |
| dnachisel/reports/optimization_reports.py |
sha256=kGgasBMgI7y3N5n3jPdX46v0K73WYerq7tr5pR4rVxo
|
14027 |
| dnachisel/reports/tools.py |
sha256=wneDTMz3snMj_TuSYJWI85dEm-ylre04Ht8_El_mvzQ
|
377 |
| dnachisel/reports/assets/logo.png |
sha256=33ltna4Nrcq9s_cZjiYVz6FTxqcutj8wVCFDgQnIi_k
|
20513 |
| dnachisel/reports/assets/optimization_report.pug |
sha256=YCFP8K-9UddaqKQlc3aAQRNMS6O9nnP9a0jMfn84FFo
|
2726 |
| dnachisel/reports/assets/style.css |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
| dnachisel/reports/constraints_reports/GraphicTranslator.py |
sha256=Sm6tdCAttxqhROt-iuiVrkVAR9rwAa9h7aN51CFUato
|
1077 |
| dnachisel/reports/constraints_reports/__init__.py |
sha256=rxg1qB8ToKgPxFzcmHFEXMzHFwVs-pyQ5W18Oj-qGxY
|
427 |
| dnachisel/reports/constraints_reports/constraints_breaches_dataframe.py |
sha256=lYp9ox9Jm_E6y3Hs12Qs2gc_cQz2tiVgbH-60KX1vmw
|
3025 |
| dnachisel/reports/constraints_reports/constraints_reports.py |
sha256=0dpWf0H4fE2bvuH1-r-L8RL71CkshdbOKFgYa06bao4
|
5119 |
| dnachisel/utils/__init__.py |
sha256=_EsHoao19ju_CuMVorV13B_nlNQNGHvC-PzC9_tDmHA
|
178 |
| dnachisel/utils/utils.py |
sha256=CV4RFy6BfUix0btbcKJJJRcocgG1lb_e1KjB2cRN0aw
|
1250 |
| dnachisel-3.2.12.data/scripts/dnachisel |
sha256=rE77gQL0Yzrnqu7YwID834xdq6PhvG1Ay0KHvs0gZpA
|
2664 |
| dnachisel-3.2.12.dist-info/LICENCE.txt |
sha256=akVjFR4jDJtNakzf3avomKdfddMyA9WHJ5aVV08efxY
|
1081 |
| dnachisel-3.2.12.dist-info/METADATA |
sha256=iPewtQMBgtqr6Y7F5h-F20vB03EmpngJh8WgjuP3H_o
|
4083 |
| dnachisel-3.2.12.dist-info/WHEEL |
sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ
|
92 |
| dnachisel-3.2.12.dist-info/top_level.txt |
sha256=C7ogP9_MdAV5t4fvjtFA7a0WByXYNttizOoZGjJ_yOk
|
10 |
| dnachisel-3.2.12.dist-info/RECORD |
— |
— |