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disease-normalizer

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0.6.0 disease_normalizer-0.6.0-py3-none-any.whl

Wheel Details

Project: disease-normalizer
Version: 0.6.0
Filename: disease_normalizer-0.6.0-py3-none-any.whl
Download: [link]
Size: 50792
MD5: 7ff7cc3932d606b051c28a131a2633ad
SHA256: a6b3cc7e7e40762b262f3948b0671e271cd79d44f596576927fc6d17dde6ab86
Uploaded: 2024-11-29 19:29:34 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: disease-normalizer
Version: 0.6.0
Summary: VICC normalization routines for diseases
Author: Alex Wagner, Kori Kuzma, James Stevenson
Project-Url: Homepage, https://github.com/cancervariants/disease-normalization
Project-Url: Documentation, https://disease-normalizer.readthedocs.io
Project-Url: Changelog, https://github.com/cancervariants/disease-normalization/releases
Project-Url: Source, https://github.com/cancervariants/disease-normalization
Project-Url: Bug Tracker, https://github.com/cancervariants/disease-normalization/issues
License: MIT License Copyright (c) 2021-2024 VICC Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Classifier: Development Status :: 3 - Alpha
Classifier: Framework :: FastAPI
Classifier: Framework :: Pydantic
Classifier: Framework :: Pydantic :: 2
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Developers
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Requires-Python: >=3.11
Requires-Dist: pydantic (==2.*)
Requires-Dist: fastapi
Requires-Dist: uvicorn
Requires-Dist: click
Requires-Dist: boto3
Requires-Dist: ga4gh.vrs (~=2.0.0a8)
Requires-Dist: psycopg[binary]; extra == "pg"
Requires-Dist: requests; extra == "pg"
Requires-Dist: owlready2 (==0.40); extra == "etl"
Requires-Dist: rdflib; extra == "etl"
Requires-Dist: wags-tails (>=0.1.2); extra == "etl"
Requires-Dist: fastobo; extra == "etl"
Requires-Dist: tqdm; extra == "etl"
Requires-Dist: pytest (>=6.0); extra == "tests"
Requires-Dist: pytest-cov; extra == "tests"
Requires-Dist: httpx; extra == "tests"
Requires-Dist: pre-commit (>=3.7.1); extra == "dev"
Requires-Dist: ruff (==0.5.0); extra == "dev"
Requires-Dist: lxml; extra == "dev"
Requires-Dist: xmlformatter; extra == "dev"
Requires-Dist: sphinx (==6.1.3); extra == "docs"
Requires-Dist: sphinx-autodoc-typehints (==1.22.0); extra == "docs"
Requires-Dist: sphinx-autobuild (==2021.3.14); extra == "docs"
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Requires-Dist: sphinxext-opengraph (==0.8.2); extra == "docs"
Requires-Dist: furo (==2023.3.27); extra == "docs"
Requires-Dist: gravis (==0.1.0); extra == "docs"
Requires-Dist: sphinx-github-changelog (==1.2.1); extra == "docs"
Provides-Extra: pg
Provides-Extra: etl
Provides-Extra: tests
Provides-Extra: dev
Provides-Extra: docs
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 2949 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.6.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
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disease/cli.py sha256=9ioaoBuIjzks8Rqqv41Pjcx0_kNr8DXt11V532iQfWM 10761
disease/main.py sha256=OVvAmCYgtPGi2t_6ARE4t6ea_H7a2mBRxYD1YKS8WP0 4046
disease/query.py sha256=usPaiG2MnkmJ5vaQVmj3bTZSVWhgmjPcv6w3ZIQQB2g 18940
disease/schemas.py sha256=MDDb2wnArNv80q46nnSscKzdRPs_lob7rdQjRpAH_Jg 14280
disease/database/__init__.py sha256=uzHi4j3ieSOXv0oAvJd0w0qVcfWAX9lNMh41oI4CEzQ 436
disease/database/database.py sha256=9G923WGXEHTubF_QO0Zy0Y_8GHCZF5AxA6c48jIbxnY 11221
disease/database/dynamodb.py sha256=ba2Pwi-r7DHVeyQ1irNvIEbSLflg1nRU5lPn7SQTbGQ 23319
disease/database/postgresql.py sha256=uu7I7bFz9HCtWdfMm9x5gLJDPOd1UXLSiI44EarZnHU 31165
disease/database/postgresql/add_fkeys.sql sha256=oZpfaL4XFGB9KB1XV12MirYwx3Ag64522_tsJE9fg3Y 588
disease/database/postgresql/add_indexes.sql sha256=U71YBeS4kqfy_YmjTpKt3jjfHxlVtII64irb7J0CRcs 550
disease/database/postgresql/create_record_lookup_view.sql sha256=U2nFYv0hx-WtsfzTy9as9OBlh5ReUp5QCfEBEGVDPw4 968
disease/database/postgresql/create_tables.sql sha256=Ff9MBy35Lnq2F5nNqg9eXdd-iO14T6RgCX2W63SITzk 1519
disease/database/postgresql/delete_normalized_concepts.sql sha256=JhGcAqrGFJ4IvEKtrAIzbg005DIOTcbUUSpQQj39N7w 736
disease/database/postgresql/drop_fkeys.sql sha256=ysFa3DGM1-Kb-yqhNFJ-zD3_Z9v_b48wCHD7SAvUXmM 312
disease/database/postgresql/drop_indexes.sql sha256=MmPzTL-8lVBGhKAoKxXEUtpjNk1y5b5_A5xZpendIRQ 339
disease/etl/__init__.py sha256=dc2h1KALmL_qYl6HfE7IJekkVALgAiIfDJzZW5Ds6I8 296
disease/etl/base.py sha256=FUWoCgGu7Fa4lqXQT8I8-Vdh2WOMhhDCVUdvbgIDows 5565
disease/etl/do.py sha256=pVZ3xDtm0xJXkaGskeXSsnIZ5hTbpWMo62plsIhqcBM 3260
disease/etl/merge.py sha256=MmC-mc-7Bu38RGHcNgIttJCGccQLDyZ6K7JPE0SV9vE 5629
disease/etl/mondo.py sha256=a8Ds6-7cvpZhUBbdYQxiKEzvGZiHG8nUG2-18cYpSE4 8033
disease/etl/ncit.py sha256=mymV3C4q-42wbedDnSNtSo3DOELXOcw8nsiZa5qRUv4 3446
disease/etl/omim.py sha256=V-_Yv0Z82WsrQWl9J1BgA-ZlwlqVzJE2STYBTell-JE 3432
disease/etl/oncotree.py sha256=VTl5GC1sX7wlLkp7MVtIIYbgjf0DOfRIp7Ell8hy_gg 3102
disease_normalizer-0.6.0.dist-info/LICENSE sha256=TFI9diU3XL0Z5r0JP4N98xtTX0LGlcN946Pkzg-4CsY 1066
disease_normalizer-0.6.0.dist-info/METADATA sha256=97AGCvsLlU2UtEAg8Wx6NoD6x5_1DmsZ-wq3q4x3rnU 6697
disease_normalizer-0.6.0.dist-info/WHEEL sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U 91
disease_normalizer-0.6.0.dist-info/entry_points.txt sha256=OLYn3oqGEasEtrepDuzqU55OGTGtDPyKscJyxCZ60GY 213
disease_normalizer-0.6.0.dist-info/top_level.txt sha256=qkL6kzfQ-aX-Zt9lunE4mRkusdVynHZEy7i8Qonh_Uk 8
disease_normalizer-0.6.0.dist-info/RECORD — —

top_level.txt

disease

entry_points.txt

[console_scripts]
disease_norm_check_db = disease.cli:check_db
disease_norm_dump = disease.cli:dump_database
disease_norm_update = disease.cli:update_db
disease_norm_update_remote = disease.cli:update_from_remote