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disease-normalizer

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0.5.0 disease_normalizer-0.5.0-py3-none-any.whl

Wheel Details

Project: disease-normalizer
Version: 0.5.0
Filename: disease_normalizer-0.5.0-py3-none-any.whl
Download: [link]
Size: 50607
MD5: 907e05dc0f006074510d7568813aeafb
SHA256: 8fe427d711c882b00dafd39e0d417759baa4e8b5280860d6a6acb2959855f902
Uploaded: 2024-07-15 15:44:58 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: disease-normalizer
Version: 0.5.0
Summary: VICC normalization routines for diseases
Author: Alex Wagner, Kori Kuzma, James Stevenson
Project-Url: Homepage, https://github.com/cancervariants/disease-normalization
Project-Url: Documentation, https://disease-normalizer.readthedocs.io
Project-Url: Changelog, https://github.com/cancervariants/disease-normalization/releases
Project-Url: Source, https://github.com/cancervariants/disease-normalization
Project-Url: Bug Tracker, https://github.com/cancervariants/disease-normalization/issues
License: MIT License Copyright (c) 2021-2024 VICC Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Classifier: Development Status :: 3 - Alpha
Classifier: Framework :: FastAPI
Classifier: Framework :: Pydantic
Classifier: Framework :: Pydantic :: 2
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Developers
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Requires-Python: >=3.10
Requires-Dist: pydantic (==2.*)
Requires-Dist: fastapi
Requires-Dist: uvicorn
Requires-Dist: click
Requires-Dist: boto3
Requires-Dist: ga4gh.vrs (~=2.0.0a8)
Requires-Dist: pre-commit (>=3.7.1); extra == "dev"
Requires-Dist: ruff (==0.5.0); extra == "dev"
Requires-Dist: lxml; extra == "dev"
Requires-Dist: xmlformatter; extra == "dev"
Requires-Dist: sphinx (==6.1.3); extra == "docs"
Requires-Dist: sphinx-autodoc-typehints (==1.22.0); extra == "docs"
Requires-Dist: sphinx-autobuild (==2021.3.14); extra == "docs"
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Requires-Dist: sphinxext-opengraph (==0.8.2); extra == "docs"
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Requires-Dist: gravis (==0.1.0); extra == "docs"
Requires-Dist: sphinx-github-changelog (==1.2.1); extra == "docs"
Requires-Dist: owlready2 (==0.40); extra == "etl"
Requires-Dist: rdflib; extra == "etl"
Requires-Dist: wags-tails (>=0.1.2); extra == "etl"
Requires-Dist: fastobo; extra == "etl"
Requires-Dist: tqdm; extra == "etl"
Requires-Dist: psycopg[binary]; extra == "pg"
Requires-Dist: requests; extra == "pg"
Requires-Dist: pytest (>=6.0); extra == "test"
Requires-Dist: pytest-cov; extra == "test"
Requires-Dist: httpx; extra == "test"
Provides-Extra: dev
Provides-Extra: docs
Provides-Extra: etl
Provides-Extra: pg
Provides-Extra: test
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 2949 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (70.3.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
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disease/cli.py sha256=9ioaoBuIjzks8Rqqv41Pjcx0_kNr8DXt11V532iQfWM 10761
disease/main.py sha256=OVvAmCYgtPGi2t_6ARE4t6ea_H7a2mBRxYD1YKS8WP0 4046
disease/query.py sha256=VHt55bktB4vCCJNvgzcgpH9gC7gaaZgxSjth5xfX7us 18963
disease/schemas.py sha256=i9QoBjVEWNTt9Ma0BHMc0OMR2_AbgXl2O0LlesRHCfc 14218
disease/database/__init__.py sha256=uzHi4j3ieSOXv0oAvJd0w0qVcfWAX9lNMh41oI4CEzQ 436
disease/database/database.py sha256=9G923WGXEHTubF_QO0Zy0Y_8GHCZF5AxA6c48jIbxnY 11221
disease/database/dynamodb.py sha256=ba2Pwi-r7DHVeyQ1irNvIEbSLflg1nRU5lPn7SQTbGQ 23319
disease/database/postgresql.py sha256=vywyOqEa6RdMmF1VwbyxIMAa-O0OLj9MkpajVaIFxK4 30827
disease/database/postgresql/add_fkeys.sql sha256=oZpfaL4XFGB9KB1XV12MirYwx3Ag64522_tsJE9fg3Y 588
disease/database/postgresql/add_indexes.sql sha256=U71YBeS4kqfy_YmjTpKt3jjfHxlVtII64irb7J0CRcs 550
disease/database/postgresql/create_record_lookup_view.sql sha256=q18Qz-47Fr4OT8_pKUrKeM2auVbCAgER7E2jdCHJYjA 939
disease/database/postgresql/create_tables.sql sha256=JGApSsXDOj9nqVj_ZMxiWF-yFyA8fIqyCrlkWTWZmPA 1457
disease/database/postgresql/delete_normalized_concepts.sql sha256=FuovELtrAJC3MaRQnL_z93slA1JoGWn0ZWXGxy0Bscg 705
disease/database/postgresql/drop_fkeys.sql sha256=ysFa3DGM1-Kb-yqhNFJ-zD3_Z9v_b48wCHD7SAvUXmM 312
disease/database/postgresql/drop_indexes.sql sha256=MmPzTL-8lVBGhKAoKxXEUtpjNk1y5b5_A5xZpendIRQ 339
disease/etl/__init__.py sha256=dc2h1KALmL_qYl6HfE7IJekkVALgAiIfDJzZW5Ds6I8 296
disease/etl/base.py sha256=2H2isPdK_vSUY8hNOVA1fIhD0NJWLJnhvJcJdELelVQ 5534
disease/etl/do.py sha256=7RkLrdEqG2hGZwjg14bIgF0n_UsONoTkHj7dtTiXQWE 3020
disease/etl/merge.py sha256=RED9Kb-xaZQ62ns4a8tHzecrYMj5rLkRrkx6hFyUs8k 5608
disease/etl/mondo.py sha256=nbHx_Wm2g5seTWHndgrDtJiqDinKuAkLBO7_WSd0p1g 7828
disease/etl/ncit.py sha256=mymV3C4q-42wbedDnSNtSo3DOELXOcw8nsiZa5qRUv4 3446
disease/etl/omim.py sha256=V-_Yv0Z82WsrQWl9J1BgA-ZlwlqVzJE2STYBTell-JE 3432
disease/etl/oncotree.py sha256=Df-bqYRzyn9r7_WjLKLqQiOmGg0ZKz5VZ4FjQL2i7Jk 3063
disease_normalizer-0.5.0.dist-info/LICENSE sha256=TFI9diU3XL0Z5r0JP4N98xtTX0LGlcN946Pkzg-4CsY 1066
disease_normalizer-0.5.0.dist-info/METADATA sha256=Id3J-7t-foaI4rDSGd4B-nYfgbbhk42l-pUrQqnyiqQ 6730
disease_normalizer-0.5.0.dist-info/WHEEL sha256=Z4pYXqR_rTB7OWNDYFOm1qRk0RX6GFP2o8LgvP453Hk 91
disease_normalizer-0.5.0.dist-info/entry_points.txt sha256=OLYn3oqGEasEtrepDuzqU55OGTGtDPyKscJyxCZ60GY 213
disease_normalizer-0.5.0.dist-info/top_level.txt sha256=qkL6kzfQ-aX-Zt9lunE4mRkusdVynHZEy7i8Qonh_Uk 8
disease_normalizer-0.5.0.dist-info/RECORD — —

top_level.txt

disease

entry_points.txt

[console_scripts]
disease_norm_check_db = disease.cli:check_db
disease_norm_dump = disease.cli:dump_database
disease_norm_update = disease.cli:update_db
disease_norm_update_remote = disease.cli:update_from_remote