Wheelodex » Projects » deepTools

deepTools

View on PyPI — Reverse Dependencies (7)

3.5.6 deepTools-3.5.6-py3-none-any.whl

Wheel Details

Project: deepTools
Version: 3.5.6
Filename: deepTools-3.5.6-py3-none-any.whl
Download: [link]
Size: 208820
MD5: 5106743cd284c3246841cb8bf1ae3539
SHA256: 7adbb7f27ba45d7dfc19687ffb3944b00687c6f2219c9e80d3b08df464a2375f
Uploaded: 2025-01-20 10:20:55 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.2
Name: deepTools
Version: 3.5.6
Summary: Useful tools for exploring deep sequencing data.
Author: Fidel Ramirez, Devon P Ryan, Björn Grüning, Friederike Dündar, Sarah Diehl, Vivek Bhardwaj, Fabian Kilpert, Andreas S Richter, Steffen Heyne, Thomas Manke
Author-Email: bioinfo-core[at]ie-freiburg.mpg.de
Project-Url: homepage, https://pypi.python.org/pypi/deepTools/
Project-Url: documentation, https://deeptools.readthedocs.io/en/latest/
Project-Url: repository, https://github.com/deeptools/deepTools
License: The file deeptools/cm.py is licensed under the BSD license, see a copy in that file. The remainder of the code is licensed under the MIT license: Copyright 2019 Max Planck Institute for Immunobiology and Epigenetics Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >3.8
Requires-Dist: numpy (>=2.0.0)
Requires-Dist: scipy (>=0.17.0)
Requires-Dist: matplotlib (>=3.5.0)
Requires-Dist: pysam (>=0.14.0)
Requires-Dist: numpydoc (>=0.5)
Requires-Dist: pyBigWig (>=0.2.1)
Requires-Dist: py2bit (>=0.2.0)
Requires-Dist: plotly (>=4.9)
Requires-Dist: deeptoolsintervals (>=0.1.8)
Requires-Dist: flake8; extra == "actions"
Requires-Dist: pytest; extra == "actions"
Requires-Dist: twine; extra == "actions"
Requires-Dist: build; extra == "actions"
Requires-Dist: planemo; extra == "actions"
Provides-Extra: actions
Description-Content-Type: text/x-rst
License-File: LICENSE.txt
[Description omitted; length: 1454 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.8.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
deeptools/SES_scaleFactor.py sha256=CdxWIqTldPJMAJ9R3GNK05JTelb1f4AImahuctcbVRA 7007
deeptools/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
deeptools/alignmentSieve.py sha256=QPuM1sYJLIyOJrG3ohfanxIJ7FhlKKeLqGJHcqe9juM 18200
deeptools/bamCompare.py sha256=JDCr_LJzoeYwXBUIoK87whb8ddHscPdLoz0GgRT3kmU 14290
deeptools/bamCoverage.py sha256=kKfdV2NkczBi85kmmJyNRP1IpWTTp9TVozjfzm5xTJc 18617
deeptools/bamHandler.py sha256=9Kt8-n_yWZbhDaiF9EWoR4wkeot0BPP3mG7CnWFyV8Q 3345
deeptools/bamPEFragmentSize.py sha256=B9PbUR-E8a4bPgVfbHpfkY6U476woZy0pY6Efj82ljE 21247
deeptools/bigwigAverage.py sha256=vlOiXBpZorc0PKobdOydumXYkUGVkLG5uY_suv96-Yo 4908
deeptools/bigwigCompare.py sha256=e3s8LB1gW6iJTUwAfPumtM87s_SZMU_-ydouLDB1508 6614
deeptools/cm.py sha256=UXeaIvPgS8q5dDC1jyzTi_Z_mWvSgi9LFgsGvqkQr10 44838
deeptools/computeGCBias.py sha256=09rPf6oDNYvyMiJTKgrpg6RX5F2EQebWw0opOyhge5Q 31006
deeptools/computeMatrix.py sha256=yM9DowR1JximaGVFWeTbaZBrTetgm9yJahzT0cbKX7Q 22446
deeptools/computeMatrixOperations.py sha256=YPpaktVnHWeKrxvmv7_lEWHNMw9uywCvQprRv43Tqp0 32110
deeptools/correctGCBias.py sha256=gt1UcgpN4d7m_2283lXhiHq3FRCQv5Fu5asrtLxz4f0 26158
deeptools/correlation.py sha256=pxOjfPnAFutk__COMHCtrz6-DaMmCzJDRZpxbDofqzg 28078
deeptools/correlation_heatmap.py sha256=qaoOoVXdJJn8luFcH0oBr2CquiBymcJUnAtvEHmvTfM 3796
deeptools/countReadsPerBin.py sha256=UhoBrhKrGThSXWkXLvQF1xHtLbezhuqU9xpDyVCvaDg 42159
deeptools/deeptools_list_tools.py sha256=T_2muXevywjF5_-YIZpDRJuVDdr8dw7sOhjABp89Trg 3349
deeptools/estimateReadFiltering.py sha256=w5t5ZHvxhnPIUEk32NmL6ABp9sRDyCEg47g4_Ed4-F8 16606
deeptools/estimateScaleFactor.py sha256=t6Sh3GN11skG62I-wm9mIaqa7qhk_6WQQ5mjnyNhIp0 4782
deeptools/getFragmentAndReadSize.py sha256=qALbKcPZfWQZfncidG2llsv46ABRl1iDoODLzLozVUc 7011
deeptools/getRatio.py sha256=Y2zB9UoV_Gv0eFLm8iw8RS7bhnQvCGf79kuW3Nx2H5g 2326
deeptools/getScaleFactor.py sha256=Qk9u0SFxLoA4xDY9Ns3BRHLlLH2kWR8frY5NG-Z8Qug 12772
deeptools/getScorePerBigWigBin.py sha256=xkkA_N7xtyb81YxR3c9RFDGUYAk4v0NJsFik1A0fVKg 11967
deeptools/heatmapper.py sha256=z2q5g8BGWFxQAWyhGLrtxcz_K_J5jnt0GBoE1Vp4L80 58987
deeptools/heatmapper_utilities.py sha256=kyaYFfPLN4BBIsg_G5foZ8p9RNvgCmKHpQ8WKPEtSXE 7169
deeptools/mapReduce.py sha256=HV4mdKPhGHPVEAB_wxo5JOtOWupeHFrIf_KF50Axhes 9786
deeptools/misc.py sha256=UXM5P3QFUS3VeaqQPZnwtnvWWB1sHlhH8_F8pAZ4O5g 597
deeptools/multiBamSummary.py sha256=lP_lL-rYmlKizieXmq7CXxWQWsmLwt62mXfVXeM3ihQ 11899
deeptools/multiBigwigSummary.py sha256=T3Ce5AsGwPKQnQVCi7ly31w4i2BHRGipnn14mI6LwgA 11291
deeptools/parserCommon.py sha256=oMZ3kj9vwHxTdJqsGglXftg7wPVm56PwX17Dp9E2mIA 43744
deeptools/plotCorrelation.py sha256=0qTmBzLlUtXx8F4QCnJbuH-40hrG7d0VAX1w_lRy0Lc 10984
deeptools/plotCoverage.py sha256=HiArflj4sQV6-iKqZAGILssKImi6rSojdzBNI5her1I 16329
deeptools/plotEnrichment.py sha256=O19tvcWCLzd4SPyo2J6cLYSr-d9GUohcjjLITLmQB1g 25244
deeptools/plotFingerprint.py sha256=sBd1yRenGWLLRqjgQ74C4HK4vj8ZN5jmv2NZnT8Ar_M 19876
deeptools/plotHeatmap.py sha256=nTHx2dOmwTVlX0QGp0UEZMMJGStcKHg4ULAiYDWOlw0 37144
deeptools/plotPCA.py sha256=iV9jZ2rMBEy9tSLBlo7-l6tQYOSg7ny8_2BtkuYKz7M 9427
deeptools/plotProfile.py sha256=YHoSIkdLClEWBRgWgte85j_fTtQnJoNJ9i0heVjy2gU 39224
deeptools/sumCoveragePerBin.py sha256=TPRXWS5SX6PduEsscLLWt-SvKsOkt4NRQn2Ed2EKSpk 9899
deeptools/utilities.py sha256=lsxsImHYZnf8mgQ8EHQ0Meaapk9XDsboy3CIVw0sBY0 14161
deeptools/writeBedGraph.py sha256=kVUuSpoU-nmASOOsbQPPbKutexY5mdQXOqJbUvYlezk 13223
deeptools/writeBedGraph_bam_and_bw.py sha256=OmOm9ASv46G8ai87_1FIF1LEGlYSyahumqdK3IWybfw 9255
deepTools-3.5.6.dist-info/LICENSE.txt sha256=J5yjDlwvBPzeHJ7iMaGARx2MaeMwC6OlCv4UrvMYQg0 1241
deepTools-3.5.6.dist-info/METADATA sha256=IHf1T_czbYqYwUVvqT7gMKvfD8CAK80Mal75pw3q2C4 4010
deepTools-3.5.6.dist-info/WHEEL sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8 91
deepTools-3.5.6.dist-info/entry_points.txt sha256=MU6RUyr59AUYBSCKRrAVqooDZe9CFJ2y4-4DJedBbyU 1061
deepTools-3.5.6.dist-info/top_level.txt sha256=VkRQCvraFyPWjJqv_ETlkxKt2-Cifny7Q7ACu8W7uRk 10
deepTools-3.5.6.dist-info/RECORD — —

top_level.txt

deeptools

entry_points.txt

[console_scripts]
alignmentSieve = deeptools.alignmentSieve:main
bamCompare = deeptools.bamCompare:main
bamCoverage = deeptools.bamCoverage:main
bamPEFragmentSize = deeptools.bamPEFragmentSize:main
bigwigAverage = deeptools.bigwigAverage:main
bigwigCompare = deeptools.bigwigCompare:main
computeGCBias = deeptools.computeGCBias:main
computeMatrix = deeptools.computeMatrix:main
computeMatrixOperations = deeptools.computeMatrixOperations:main
correctGCBias = deeptools.correctGCBias:main
deeptools = deeptools.deeptools_list_tools:main
estimateReadFiltering = deeptools.estimateReadFiltering:main
estimateScaleFactor = deeptools.estimateScaleFactor:main
multiBamSummary = deeptools.multiBamSummary:main
multiBigwigSummary = deeptools.multiBigwigSummary:main
plotCorrelation = deeptools.plotCorrelation:main
plotCoverage = deeptools.plotCoverage:main
plotEnrichment = deeptools.plotEnrichment:main
plotFingerprint = deeptools.plotFingerprint:main
plotHeatmap = deeptools.plotHeatmap:main
plotPCA = deeptools.plotPCA:main
plotProfile = deeptools.plotProfile:main