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1.1.3 decoil-1.1.3-py3-none-any.whl

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Project: decoil
Version: 1.1.3
Filename: decoil-1.1.3-py3-none-any.whl
Download: [link]
Size: 108788
MD5: 44ad32a7b2c30b12c21f3fd4b1bf6081
SHA256: ce536969e23f718c889396439d841c1d37475fa5f3d0ce8a504d6f0534df4822
Uploaded: 2024-10-29 07:39:16 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: decoil
Version: 1.1.3
Summary: EcDNA reconstruction from long-read nanopore data
Author: Madalina Giurgiu
Author-Email: giurgiumadalina25[at]gmail.com
License: MIT
Requires-Python: >=3.10.0
Requires-Dist: biopython (==1.80)
Requires-Dist: intervaltree (==3.1.0)
Requires-Dist: matplotlib (==3.5.0)
Requires-Dist: mosek (==10.1.21)
Requires-Dist: nanomath (==1.3.0)
Requires-Dist: networkx (==2.5.1)
Requires-Dist: numpy (==1.23)
Requires-Dist: overrides (==7.4.0)
Requires-Dist: pandas (==2.2.3)
Requires-Dist: pulp (==2.7.0)
Requires-Dist: pyBigWig (==0.3.22)
Requires-Dist: pybedtools (==0.9.0)
Requires-Dist: pysam (==0.21.0)
Requires-Dist: scikit-learn (==1.3.2)
Requires-Dist: scipy (==1.8)
Requires-Dist: seaborn (==0.13.0)
Requires-Dist: setuptools (==68.2.2)
Requires-Dist: snakemake (==7.32.4)
Requires-Dist: vcfpy (==0.13.8)
Requires-Dist: bionumpy (==1.0.12)
Requires-Dist: nanomonsv (==0.7.2)
Requires-Dist: configparser (==7.1.0)
Requires-Dist: svim (==2.0.0)
Requires-Dist: cuteSV (==2.1.1)
Requires-Dist: cython (==3.0.11)
Requires-Dist: parasail (==1.3.4)
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 10181 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.44.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

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decoil/command.py sha256=P56dcqWcTvjy6S-KnZxEef6myR5KD-17o1is1rAgiRs 6504
decoil/main.py sha256=2N2bBW424muRPzptyWhqrbDFKvv27XosEkaqA-HD1Ak 20927
decoil/utils.py sha256=Nvlfz4YbryGv0LHcc2VnZAUbKq_J-F5LeHdX2WAwjnA 6784
decoil/cli/Snakefile sha256=HWxtyxA58NBiapt0EqR_0m8Cy2nYf4IizWdvBGbczjU 2998
decoil/cli/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
decoil/cli/decoil-full.json sha256=39ZCcIfx34oa_V9Ps9vPgXyLOg2vZ3cqlw5AvI8yjNM 38
decoil/cli/params-decoil-full.json sha256=cscvlEJf54EgVmoJSgRGEgcRaFgFKXxAq-Zh7XpPb9w 187
decoil/cli/reconstruct-only-params.json sha256=1l02-_7CnwrA8Oae_wz7MNNwmlKpNMdQWDH0Bso4A6c 159
decoil/cli/reconstruct-only.json sha256=nzkObxcwxW4lmcD28Wl9xmgbAoL_5hY3gb5-14pSSos 87
decoil/cli/reconstruct-plot.json sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
decoil/cli/sv-only-params.json sha256=Bh9Vz6O_IWjioIpzeYX6QDZU9I5nkkaM9eJWW370gBs 101
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decoil/cli/sv-reconstruct-params.json sha256=1l02-_7CnwrA8Oae_wz7MNNwmlKpNMdQWDH0Bso4A6c 159
decoil/cli/sv-reconstruct.json sha256=1gdTGrI9H60OB379I-vkwMs3wKwoktsiv5aq0GaQbIA 85
decoil/cli/envs/cov.yaml sha256=uoStXnG40hJ_h9sO_c_Y75Mh9zlu20Xpz1IctkSCZcI 127
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decoil/cli/rules/sv.smk sha256=4bup-ecbGojRcXLQWSR7ZVJFjdEQS5vFCJ3J1x7rI58 1219
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decoil/output/parse.py sha256=p3oS9LdYDuFkNJKn8DeTVFaiMHmfVaoayRqwxE9rvQQ 8891
decoil/search/__init__.py sha256=_9lF6-KMloEMWBaMho5rmHVQwmLP3r2QQbgEuj1bzMw 80
decoil/search/cycles.py sha256=Ta7U8Q4pPAHdp7MgnK3WPSgi47mDSy96JgWQ3j9tthU 11753
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decoil/search/search.py sha256=RYMB0ShFqyAUJHHIqY1HJeKWGvnpncOrC9XJ8M7j7jQ 8659
decoil/validate/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
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decoil-1.1.3.dist-info/LICENSE sha256=R114bclEe1jMTTEaw_Yxots9FLTmQ1hinnY8o-6dYlc 1572
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decoil-1.1.3.dist-info/WHEEL sha256=eOLhNAGa2EW3wWl_TU484h7q1UNgy0JXjjoqKoxAAQc 92
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decoil-1.1.3.dist-info/top_level.txt sha256=6cruOrBCC5fQVZPo-C1OCON80jnjIoBaTHMoTIYpQlw 13
decoil-1.1.3.dist-info/RECORD — —

top_level.txt

decoil
tests

entry_points.txt

[console_scripts]
decoil = decoil.main:main
decoil-pipeline = decoil.command:entry_point