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1.8.1 ddrage-1.8.1-py3-none-any.whl

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Project: ddrage
Version: 1.8.1
Filename: ddrage-1.8.1-py3-none-any.whl
Download: [link]
Size: 237775
MD5: 5e152927f53db1c0416d768b6916f4dd
SHA256: eddb7849e73cb67ca2263ae59763fafc6c30412ffd0e3bb851844b4f3a9fa90b
Uploaded: 2024-04-04 21:14:15 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: ddrage
Version: 1.8.1
Summary: Simulator for ddRADseq (double digest restriction site associated DNA sequencing) datasets. Generates reads (FASTQ format) that can be analyzed and validated using a ground truth file (YAML).
Author-Email: Henning Timm <henning.timm[at]uni-due.de>
Project-Url: Homepage, https://ddrage.readthedocs.io/en/latest/
Project-Url: Documentation, https://ddrage.readthedocs.io/en/latest/
Project-Url: Repository, https://bitbucket.org/genomeinformatics/rage
Project-Url: Bug Tracker, https://bitbucket.org/genomeinformatics/rage/issues
Project-Url: Changelog, https://ddrage.readthedocs.io/en/latest/changelog/
License: The MIT License (MIT) Copyright (c) 2016 Henning Timm Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Requires-Dist: numpy
Requires-Dist: numba
Requires-Dist: matplotlib
Requires-Dist: seaborn
Requires-Dist: scipy (>=1.4.1)
Requires-Dist: pyyaml
Requires-Dist: dinopy
Requires-Dist: bokeh (>=3.1.1); extra == "bbd-visualization"
Requires-Dist: sphinx (>=1.5.0); extra == "documentation"
Provides-Extra: bbd-visualization
Provides-Extra: documentation
Description-Content-Type: text/x-rst
License-File: LICENSE.rst
[Description omitted; length: 3184 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.43.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

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ddrage-1.8.1.dist-info/RECORD — —

top_level.txt

ddrage

entry_points.txt

[console_scripts]
ddrage = ddrage.__main__:main
learn_qmodel = ddrage.tools.learn_qmodel:main
rage = ddrage.__main__:main
randomize_fastq = ddrage.tools.randomize_fastq:main
remove_annotation = ddrage.tools.remove_annotation:main
split_by_p7_barcode = ddrage.tools.split_by_p7_barcode:main
visualize_bbd = ddrage.tools.bbd_visualization:main_standalone