Reverse Dependencies of dask-image

The following projects have a declared dependency on dask-image:

• acquifer-napari — Loader plugin for napari, to load Acquifer Imaging Machine datasets in napari, using dask for efficient lazy data-loading.
• aestetik — AESTETIK: AutoEncoder for Spatial Transcriptomics Expression with Topology and Image Knowledge
• aicsimageio — Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python
• aind-large-scale-prediction — Generated from aind-library-template
• astroCAST — Package to analyze calcium fluorescence events in astrocytes
• bellavista — Python package for interactive visualization of imaging-based spatial transcriptomics.
• cellpose — anatomical segmentation algorithm
• cellpose-omni — cellpose fork developed for omnipose
• cellpose-omni-acdc — cellpose fork developed for omnipose
• cellpose-plus — cell segmenetation framework based on cellpose
• cellpose-vollseg — modification of cellpose algorithm
• clij2-fft — A python wrapper around clij2 opencl FFT algorithms
• clonedetective — A python package for the scalable analysis of fluorescent imaging data from lineage tracing experiments.
• confluentfucci — no summary
• crl-datacube — Utilities for scaling geospatial analyses
• cvpl-tools — A Python package for utilities and classes related to the file I/O, dataset record keeping and visualization for image processing and computer vision.
• dexp — Light-sheet Dataset EXploration and Processing
• echopype — Enhancing the interoperability and scalability in analyzing ocean sonar data
• ecosound — Python toolkit for analysing passive acoustic data
• fastfuels-core — Core algorithms for the FastFuels project
• fishsound-finder — Python software to automatically detect fish sounds in passive acoustic recordings
• geo-inference — Extract features from geospatial imagery using deep learning models
• graphcompass — Spatial metrics for differential analyses of cell organization across conditions
• impy-array — Speed up coding/extending image analysis in Python.
• Large-Image-Viewer — A simple plugin to view large images
• lys-python — Interactive multi-dimensional data analysis and visualization
• magnify — A microscopy image processing toolkit.
• maxrf4u — Explore your X-Ray Fluorescence spectral images
• mesoscopy — Analysis pipeline for rodent widefield calcium imaging data.
• mps-motion — Library for tracking motion in cardiac mps data
• multiscale_spatial_image — Generate a multiscale, chunked, multi-dimensional spatial image data structure that can be serialized to OME-NGFF.
• multiview-stitcher — Registration and fusion of large imaging datasets in 2D and 3D.
• napari-data-preview — Preview lightsheet microscopes acquisition, and allow the creation of an XML for importing the data into TeraStitcher.
• napari-deeplabcut — napari + DeepLabCut annotation tool
• napari-PHILOW — PHILOW is an interactive deep learning-based platform for 3D datasets
• napari-video-cvdask — A Video File Reader that uses OpenCV2 and Dask Arrays
• ngff-zarr — A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
• ngio — Next Generation file format IO
• nima — Numerical IMage Analyses.
• nima-io — A project to read microscopy files.
• odc-algo — Miscellaneous Algorithmic helper methods
• openst — The computational pipeline for the Open-ST method.
• Paidiverpy — A library to preprocess image data.
• palmari — Palmari provides a plugin to analyze PALM movies, as well as microscope recordings of other SMLM-based SPT modalities. Set up your pipeline on one file, run it on a folder !
• pygmtsar — PyGMTSAR (Python GMTSAR): Powerful and Accessible Satellite Interferometry
• pymana — no summary
• pythoncharmers-meta — Meta package with dependencies for Python Charmers training courses
• pyxem — multi-dimensional diffraction microscopy
• raster-tools — Tools for processing geospatial data
• satpy — Python package for earth-observing satellite data processing
• scematk — no summary
• scroll-renderer — A package for flattening and rendering 3D meshes of segments of the Herculaneum Papyri.
• spaceTree — PyPI package for multi-task label transfer from single-cell refrence data to spatial data
• spatialdata — Spatial data format.
• spatialdata-io — SpatialData IO for common techs
• squidpy — Spatial Single Cell Analysis in Python
• stars-omics — A spatial transcriptomics analysis tool.
• viewmask — A Python package and CLI to view XML annotations and NumPy masks.
• weldx — Python API for the WelDX file format and standard
• xblobs — Python tool to detect and analyse coherent structures in turbulence, powered by xarray.
• xcube-core — xcube is a Python package for generating and exploiting data cubes powered by xarray, dask, and zarr.
• ximage — xarray-based tools for image/video processing