Path |
Digest |
Size |
cumulus_library/.sqlfluff |
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8313 |
cumulus_library/__init__.py |
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cumulus_library/base_utils.py |
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cumulus_library/cli.py |
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cumulus_library/cli_parser.py |
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cumulus_library/db_config.py |
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cumulus_library/enums.py |
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cumulus_library/errors.py |
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cumulus_library/log_utils.py |
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cumulus_library/module_allowlist.json |
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cumulus_library/study_manifest.py |
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cumulus_library/actions/builder.py |
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cumulus_library/actions/cleaner.py |
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cumulus_library/actions/exporter.py |
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cumulus_library/actions/file_generator.py |
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cumulus_library/actions/importer.py |
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cumulus_library/actions/uploader.py |
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cumulus_library/apis/__init__.py |
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cumulus_library/apis/umls.py |
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cumulus_library/builders/README.md |
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cumulus_library/builders/base_table_builder.py |
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cumulus_library/builders/counts.py |
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cumulus_library/builders/protected_table_builder.py |
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cumulus_library/builders/psm_builder.py |
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cumulus_library/builders/valueset_builder.py |
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cumulus_library/builders/reference_sql/psm.sql |
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cumulus_library/builders/statistics_templates/count.sql.jinja |
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cumulus_library/builders/statistics_templates/counts_templates.py |
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cumulus_library/builders/statistics_templates/psm_create_covariate_table.sql.jinja |
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cumulus_library/builders/statistics_templates/psm_distinct_ids.sql.jinja |
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cumulus_library/builders/statistics_templates/psm_templates.py |
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cumulus_library/builders/valueset/additional_rules_builder.py |
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cumulus_library/builders/valueset/lookup_drug_from_ingredient_rules.tsv |
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cumulus_library/builders/valueset/rxnorm_valueset_builder.py |
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cumulus_library/builders/valueset/static_builder.py |
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cumulus_library/builders/valueset/umls.py |
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cumulus_library/builders/valueset/valueset_utils.py |
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cumulus_library/builders/valueset/vsac.py |
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cumulus_library/builders/valueset/template_sql/create_included_keywords.sql.jinja |
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cumulus_library/builders/valueset/template_sql/create_keyword_annotated_table.sql.jinja |
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cumulus_library/builders/valueset/template_sql/create_search_rules_descriptions.sql.jinja |
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cumulus_library/builders/valueset/template_sql/umls_iterate.sql.jinja |
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1417 |
cumulus_library/databases/__init__.py |
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cumulus_library/databases/athena.py |
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cumulus_library/databases/base.py |
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cumulus_library/databases/duckdb.py |
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cumulus_library/databases/utils.py |
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cumulus_library/studies/core/__init__.py |
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cumulus_library/studies/core/builder_allergyintolerance.py |
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cumulus_library/studies/core/builder_condition.py |
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cumulus_library/studies/core/builder_diagnosticreport.py |
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cumulus_library/studies/core/builder_documentreference.py |
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cumulus_library/studies/core/builder_encounter.py |
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cumulus_library/studies/core/builder_medicationrequest.py |
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cumulus_library/studies/core/builder_observation.py |
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cumulus_library/studies/core/builder_patient.py |
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cumulus_library/studies/core/builder_prereq_tables.py |
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cumulus_library/studies/core/count_core.py |
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cumulus_library/studies/core/fhir_lookup_tables.sql |
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cumulus_library/studies/core/fhir_mapping_tables.sql |
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4879 |
cumulus_library/studies/core/manifest.toml |
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cumulus_library/studies/core/meta_date.sql |
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cumulus_library/studies/core/observation_type.sql |
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cumulus_library/studies/core/setup.sql |
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cumulus_library/studies/core/version.sql |
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cumulus_library/studies/core/core_templates/allergyintolerance.sql.jinja |
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cumulus_library/studies/core/core_templates/completion_utils.jinja |
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cumulus_library/studies/core/core_templates/condition.sql.jinja |
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2309 |
cumulus_library/studies/core/core_templates/core_templates.py |
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cumulus_library/studies/core/core_templates/core_utils.jinja |
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cumulus_library/studies/core/core_templates/diagnosticreport.sql.jinja |
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cumulus_library/studies/core/core_templates/documentreference.sql.jinja |
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cumulus_library/studies/core/core_templates/encounter.sql.jinja |
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cumulus_library/studies/core/core_templates/medicationrequest.sql.jinja |
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cumulus_library/studies/core/core_templates/patient.sql.jinja |
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— |
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