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csr2transmart

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0.4.0 csr2transmart-0.4.0-py3-none-any.whl

Wheel Details

Project: csr2transmart
Version: 0.4.0
Filename: csr2transmart-0.4.0-py3-none-any.whl
Download: [link]
Size: 39041
MD5: d94c8aa1ac14eca5ac7d058be0a635d5
SHA256: 7aefb4b9c11665d1b2ebf78dac9912c8361661475e0b51081626a2c5b4b46f00
Uploaded: 2022-09-26 09:56:54 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: csr2transmart
Version: 0.4.0
Summary: Script to load CSR data to TranSMART
Author: Gijs Kant
Author-Email: gijs[at]thehyve.nl
Home-Page: https://github.com/thehyve/python_csr2transmart
License: MIT
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Requires-Python: >=3.7.0
Requires-Dist: importlib-metadata (<4.12,>=4.11)
Requires-Dist: click (<8.0,>=7.0)
Requires-Dist: transmart-loader (<1.5.0,>=1.4.1)
Requires-Dist: pydantic (<1.11,>=1.10)
Requires-Dist: python-dateutil (<2.9.0,>=2.8.0)
Requires-Dist: pandas (<1.4.3,>=1.3.5)
Requires-Dist: PyYAML (<6.1,>=5.4)
Requires-Dist: prospector[with_pyroma]; extra == "dev"
Requires-Dist: yapf; extra == "dev"
Requires-Dist: isort; extra == "dev"
Provides-Extra: dev
License-File: LICENSE
[Description omitted; length: 14343 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.37.1)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
csr/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
csr/csr.py sha256=6_cSFPPAneQLjYiL6M-Nu6kFDlBwSg9OGOXWBNX4rj4 5436
csr/entity_reader.py sha256=g1B7FwofsCg6Pc9oqx9ykeTs9ojY9WM-rNvWaGn1hJM 1664
csr/entity_validation.py sha256=tMSE3AfM9KTbUw1cMD2iALY1z1PZTpZ1ATuQ4z-gHSs 763
csr/entity_writer.py sha256=6hJVX9-WQ6kAp7_E3sboyQF3kzlxAr1X3uSYG3bmtxM 1418
csr/exceptions.py sha256=QRS4jlY88E4FcZKIlHhrpk0Be2711zeZbYD4FHNhRU8 181
csr/logging.py sha256=t_Z56Sc0NOSm0kIIlPkjfyC6BUUiCKrvE_Rh7AdFTrY 621
csr/snake_case.py sha256=lAeu6UqfOdpXdhkjJiUsI00xTrX402KL-S3sirFo_DQ 216
csr/study_registry_reader.py sha256=Tb5vWeY92k3F49sR92iDxYAz_oZwSw9EQP_nFvCdN_w 1084
csr/study_registry_writer.py sha256=rgz-tTiCaoVro2OoZlDYbmWBOdLKvlDK8Cg5WUv_N2k 685
csr/subject_registry_reader.py sha256=hGSGkcv_g1X8VUy9hjr9YKXkhg8A1tYuyVvEeVC4Ees 1137
csr/subject_registry_writer.py sha256=VppZcdLugQJvUx0WSZAJ7Qa40054Uhcfw18JUdxxNJ8 729
csr/tabular_file_reader.py sha256=c2x3_AbAHzvSQpFSfyo0IAE52_JsGHrwd5-jdU9PeTk 1579
csr2cbioportal/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
csr2cbioportal/create_caselist.py sha256=odtA72v0XvwbvHMRdxQ0aQkEVpUfMCbE303VL-vII4k 1486
csr2cbioportal/create_metafile.py sha256=0uBiHbDzx-dyGKkxotTcahBJ-aLsnYz1iYzVL069Iis 3297
csr2cbioportal/csr2cbioportal.py sha256=acfNYlA4Ttxppe2z84OTfzT0qnAQjaSwp373hrpMNM8 15718
csr2cbioportal/transform_clinical.py sha256=BztkSeWeI7DzhSzGzUJfhZKmSlhTpFPHZ1-7NB_tqvc 9699
csr2transmart/__init__.py sha256=2BPXTWv-h7IhRPceF8berwAfoNwjhfKd7dLR-X0jFVE 131
csr2transmart/csr2transmart.py sha256=orzUgvNRmxeh5lsvVj0AU-0cBZLddx07L5RzBt8DHc0 3203
csr2transmart/ontology_config.py sha256=d3o5LWO-z8JzI_Zvf2qZ11_yPTQdF82OlX3s5tkYuGw 3286
csr2transmart/mappers/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
csr2transmart/mappers/csr_mapper.py sha256=v2BL5dWmxYdZpvDaMBWvZWOWfzRv1Mw4ee1GGAvvryo 3896
csr2transmart/mappers/observation_mapper.py sha256=wyoV4MvChMuD5HKhN_rj7y-iwqrCkfFjzQ5Pf7L-j7M 11888
csr2transmart/mappers/ontology_mapper.py sha256=pw6J_DKFETpvcldnl-CwRzjXsWbWi_nHPKeFR2nQy3Y 3998
sources2csr/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
sources2csr/codebook.py sha256=5S75YAo9MGhNuAboRhuwID32kKEGhSV9GIiVA3sUz7c 214
sources2csr/codebook_mapper.py sha256=g1Gx_6ASs0k00hn-s_nYjE5KwrxjWIaeTQMq_kXuo64 3865
sources2csr/derived_values.py sha256=7sq-Ra30J4uZhvKGIX_CEg8gQJ8xr-eW9Ca--CTIMec 1987
sources2csr/sources2csr.py sha256=0PL4m2yAkmpmhYJW7HAwpRzXVFVr0bzbmvsUX-WsN9c 1557
sources2csr/sources_config.py sha256=MZKz6P_khb-JQZamDQhJYN0pE663blELKZDPSZCGSkI 1405
sources2csr/sources_reader.py sha256=WrFRpXbnvoVSvrjz3eYw_fkYxLu-O-AASVPCHYULg3Y 12136
csr2transmart-0.4.0.dist-info/LICENSE sha256=EQgf9qe9YN83SkKmbn6IScKtnraVA2RkXKGmBl3Fl-4 1080
csr2transmart-0.4.0.dist-info/METADATA sha256=nyXmkbrCxkSJvP0oFMLmb1IFEzoYkZvt1S0s8hhz338 15557
csr2transmart-0.4.0.dist-info/WHEEL sha256=G16H4A3IeoQmnOrYV4ueZGKSjhipXx8zc8nu9FGlvMA 92
csr2transmart-0.4.0.dist-info/entry_points.txt sha256=TD2V2TURheqcgeJP1ubGdJ838KDZarO51-upe9iwMCk 162
csr2transmart-0.4.0.dist-info/top_level.txt sha256=J3sMcT9HiyNVBLOsjtl_7BXsMK9jOc18a3fwvlLeL14 45
csr2transmart-0.4.0.dist-info/RECORD — —

top_level.txt

csr
csr2cbioportal
csr2transmart
sources2csr

entry_points.txt

[console_scripts]
csr2cbioportal = csr2cbioportal.csr2cbioportal:main
csr2transmart = csr2transmart.csr2transmart:main
sources2csr = sources2csr.sources2csr:main