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cryoemservices

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1.0.2 cryoemservices-1.0.2-py3-none-any.whl

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Project: cryoemservices
Version: 1.0.2
Filename: cryoemservices-1.0.2-py3-none-any.whl
Download: [link]
Size: 161121
MD5: 9e9f5c174073539542b0b7236facd6b9
SHA256: 8646e692459fddc9b539745cd6d9162ca146b4e722cf90a0b6ca36153d85dd05
Uploaded: 2025-01-16 15:06:40 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.2
Name: cryoemservices
Version: 1.0.2
Summary: Services for CryoEM processing
Author-Email: "Diamond Light Source - Data Analysis et al." <dataanalysis[at]diamond.ac.uk>
Project-Url: Bug-Tracker, https://github.com/DiamondLightSource/cryoem-services/issues
Project-Url: GitHub, https://github.com/DiamondLightSource/cryoem-services
License: BSD 3-Clause License Copyright (c) 2023, Diamond Light Source Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Keywords: cryoem-services
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Requires-Python: >=3.10
Requires-Dist: defusedxml
Requires-Dist: gemmi (==0.6.5)
Requires-Dist: graypy
Requires-Dist: healpy
Requires-Dist: icebreaker-em
Requires-Dist: ispyb (>=10.2.3)
Requires-Dist: mrcfile
Requires-Dist: numpy (<2)
Requires-Dist: pillow
Requires-Dist: plotly
Requires-Dist: pydantic (>=2)
Requires-Dist: pystackreg
Requires-Dist: readlif
Requires-Dist: SimpleITK
Requires-Dist: starfile
Requires-Dist: stomp-py (==8.1.0)
Requires-Dist: tifffile
Requires-Dist: workflows (>=3)
Requires-Dist: zocalo (>=1.2)
Requires-Dist: bump-my-version; extra == "dev"
Requires-Dist: ipykernel; extra == "dev"
Requires-Dist: pre-commit; extra == "dev"
Requires-Dist: pytest; extra == "dev"
Requires-Dist: pytest-datafiles; extra == "dev"
Requires-Dist: pytest-mock; extra == "dev"
Provides-Extra: dev
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 6912 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.8.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

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cryoemservices-1.0.2.dist-info/RECORD — —

top_level.txt

cryoemservices

entry_points.txt

[ccpem_pipeliner.jobs]
combine_star_files_job = cryoemservices.pipeliner_plugins.combine_star_job:ProcessStarFiles
[console_scripts]
clem.align_and_merge = cryoemservices.cli.clem_align_and_merge:run
clem.lif_to_stack = cryoemservices.cli.clem_lif_to_stack:run
clem.tiff_to_stack = cryoemservices.cli.clem_tiff_to_stack:run
combine_star_files = cryoemservices.pipeliner_plugins.combine_star_files:main
cryoemservices.find_symmetry = cryoemservices.pipeliner_plugins.symmetry_finder:run
cryoemservices.reextract = cryoemservices.pipeliner_plugins.reextract:run
cryoemservices.resubmit_wrapper = cryoemservices.cli.resubmit_wrapper:run
cryoemservices.service = cryoemservices.cli.start_service:run
cryoemservices.wrap = cryoemservices.cli.run_wrapper:run
relipy.link = cryoemservices.cli.project_linker:run
[cryoemservices.services.cluster.schedulers]
slurm = cryoemservices.services.cluster_submission:submit_to_slurm
[cryoemservices.services.images.plugins]
mrc_central_slice = cryoemservices.services.images_plugins:mrc_central_slice
mrc_to_apng = cryoemservices.services.images_plugins:mrc_to_apng
mrc_to_jpeg = cryoemservices.services.images_plugins:mrc_to_jpeg
picked_particles = cryoemservices.services.images_plugins:picked_particles
picked_particles_3d_apng = cryoemservices.services.images_plugins:picked_particles_3d_apng
picked_particles_3d_central_slice = cryoemservices.services.images_plugins:picked_particles_3d_central_slice
[cryoemservices.services.process_recipe.filters]
ispyb = cryoemservices.util.process_recipe_tools:ispyb_filter
[cryoemservices.wrappers]
CLEMAlignAndMerge = cryoemservices.wrappers.clem_align_and_merge:AlignAndMergeWrapper
CLEMLIFToStack = cryoemservices.wrappers.clem_process_raw_lifs:LIFToStackWrapper
CLEMTIFFToStack = cryoemservices.wrappers.clem_process_raw_tiffs:TIFFToStackWrapper
Class2D = cryoemservices.wrappers.class2d_wrapper:Class2DWrapper
Class3D = cryoemservices.wrappers.class3d_wrapper:Class3DWrapper
Refine3D = cryoemservices.wrappers.refine3d_wrapper:Refine3DWrapper
[workflows.services]
BFactor = cryoemservices.services.bfactor_setup:BFactor
CTFFind = cryoemservices.services.ctffind:CTFFind
ClusterSubmission = cryoemservices.services.cluster_submission:ClusterSubmission
CrYOLO = cryoemservices.services.cryolo:CrYOLO
Denoise = cryoemservices.services.denoise:Denoise
DenoiseSlurm = cryoemservices.services.denoise_slurm:DenoiseSlurm
EMISPyB = cryoemservices.services.ispyb_connector:EMISPyB
Extract = cryoemservices.services.extract:Extract
ExtractClass = cryoemservices.services.extract_class:ExtractClass
IceBreaker = cryoemservices.services.icebreaker:IceBreaker
Images = cryoemservices.services.images:Images
MembrainSeg = cryoemservices.services.membrain_seg:MembrainSeg
MotionCorr = cryoemservices.services.motioncorr:MotionCorr
NodeCreator = cryoemservices.services.node_creator:NodeCreator
PostProcess = cryoemservices.services.postprocess:PostProcess
ProcessRecipe = cryoemservices.services.process_recipe:ProcessRecipe
SelectClasses = cryoemservices.services.select_classes:SelectClasses
SelectParticles = cryoemservices.services.select_particles:SelectParticles
TomoAlign = cryoemservices.services.tomo_align:TomoAlign
TomoAlignSlurm = cryoemservices.services.tomo_align_slurm:TomoAlignSlurm