Path |
Digest |
Size |
coppafish/__init__.py |
sha256=C90NUhi7hgLq35hR3FW9amnHFtdeO2uOwAI729j1MiM
|
415 |
coppafish/__main__.py |
sha256=0PMgdgCQIPnYqoRcZ6qxiUbDvQ2YPxyPi-AMOqC305w
|
1769 |
coppafish/_version.py |
sha256=gW5NUxwGdPsiQjn0cOuuQT11pfthByI5DITDg_HMhLQ
|
22 |
coppafish/call_spots/__init__.py |
sha256=86QcDs2600tvOoUkKCZCiGjA4J-XSUT-VqB5Rdigbcw
|
607 |
coppafish/call_spots/background.py |
sha256=00BkQ0t7UlAb4uVO5Z2lfvtLGue8tj8k_hLdDIUiKjs
|
3770 |
coppafish/call_spots/background_optimised.py |
sha256=-28isVQAa_IA0pM48oBNJoOVmpRStPtASdJfBXBnZCs
|
3579 |
coppafish/call_spots/base.py |
sha256=AvOtWAk26mrYI6OhqpKD_ojPcGxcmxcDCBKKv4IPolI
|
15508 |
coppafish/call_spots/bleed_matrix.py |
sha256=QOFFexNccU86sXwC0lapk2hto5PRKPcQ_1qF_yCgCic
|
16824 |
coppafish/call_spots/dot_product.py |
sha256=7mtAxBr3G9i-Vl9aJjfUJ1pRafkxQOIPAYNDu0A9a3E
|
4317 |
coppafish/call_spots/dot_product_optimised.py |
sha256=KXJntIGZaoaQjky-9MudwbthFbPC849LZYBwIPiijvk
|
3677 |
coppafish/call_spots/qual_check.py |
sha256=ynFp9BMk0vtBjrfh8yWm_D46LcG9qVvT7mIVSVLBU-g
|
4627 |
coppafish/call_spots/qual_check_optimised.py |
sha256=ce1vdafXlG56MMCf1_uspISG7HwVo5ayV2HxAx94Ues
|
817 |
coppafish/extract/__init__.py |
sha256=342bDWeRVaP-Y19i3o3snDK2niHnDXVqRahU4ZkYe8w
|
302 |
coppafish/extract/base.py |
sha256=dx_ftbQp0usB1ZTFxCZ7T44mzLl3KYh3jLaNvDPkk6k
|
6293 |
coppafish/extract/deconvolution.py |
sha256=TFC6_DQW8A8LTOhvqo-j0QEImVEQhJtbhVYdFzWVOAY
|
9157 |
coppafish/extract/fstack.py |
sha256=HEsOhS_pXnqh91OvEvhfz2amZB1qX9EtuWMCOKRoL9E
|
9199 |
coppafish/extract/scale.py |
sha256=zGd7RKbWXJKL7wCTJAnVQLiO1SmlwGUxg9FkBkQvk7s
|
8670 |
coppafish/find_spots/__init__.py |
sha256=KN9ZPh2PD_kyIUzpbRdAb9eyQ08rMrNiQeUW5vuQHRw
|
237 |
coppafish/find_spots/base.py |
sha256=zLblITfJOQcMakVZX3pjNsgYT4AlqsDi9a1OpccTn54
|
5500 |
coppafish/find_spots/check_spots.py |
sha256=w3E9q1-PMQ1K3vQ7DAMMag8ZwRhUjdXy0EZ9BjKOV_I
|
6899 |
coppafish/find_spots/detect.py |
sha256=_OpRAQYpFJnEVwF_xwVtSEj9KvUOrpkAPvb_AMuheyc
|
3059 |
coppafish/find_spots/detect_optimised.py |
sha256=RnG1h6uPk9JABIw7HwlyHLLaiOXEv8bQo48i-EdSgCw
|
5849 |
coppafish/omp/__init__.py |
sha256=TyhTK1jxHUReo7G42F7FXfLZ64F8rkHgxn8V7hQZ9vg
|
228 |
coppafish/omp/base.py |
sha256=apOmO7qcDwIWOQQ1b6yNuNVqAyc8M5udrzpBuk5MNE4
|
1118 |
coppafish/omp/coefs.py |
sha256=4xG04WiBTYObSIJB53AsbnD2fC3Fmaq3Byl3cPcz2ww
|
24827 |
coppafish/omp/coefs_optimised.py |
sha256=N6Ct2zv1GfyxrGobSuu3op_hctHB-ilUzBiVY78vhPE
|
28311 |
coppafish/omp/spots.py |
sha256=DMAWwjbjEVpKvvUMQz138OlN_2N6dnC6_ndG8PToUNE
|
20486 |
coppafish/pipeline/__init__.py |
sha256=UBqKH_K8cjnlKwBT76ljSTTUo-xT8yMmEdlf8Hl3s6g
|
363 |
coppafish/pipeline/basic_info.py |
sha256=pjAvc1oRNbWv3mizD3CDKknSbSe1hgiKVMBEAhZm9i4
|
10747 |
coppafish/pipeline/call_reference_spots.py |
sha256=tgyVIzpL9CM1h2feYv1XVd3pqLSJPfYWwQhcmpLPt3E
|
17619 |
coppafish/pipeline/extract_run.py |
sha256=HlpP4UC5-EVqKr57Oj_bOURRSrmg6QOT0SZyndt1K9s
|
19347 |
coppafish/pipeline/find_spots.py |
sha256=9-PZV_OHq5XudkuLMRKxn0gpQGWFuWVxBhEGJfVqpgs
|
6205 |
coppafish/pipeline/get_reference_spots.py |
sha256=ELhm3_PJTxVuxqimYkMccuBBLC7pZ9RivnikdGTnq_w
|
5596 |
coppafish/pipeline/omp.py |
sha256=QduDzWiSWVWu4VpaO8QlDRnfXMOXhE9DwP_spsIPJ3Y
|
18312 |
coppafish/pipeline/register.py |
sha256=5uzihgpJISYeLof_S2KBmTKEIwT6bwWiEXJjedBUFvc
|
6178 |
coppafish/pipeline/register_initial.py |
sha256=c_stwn6Bo6t7yUacuurcBZLwMkmSzgY2pm8cw1rQYbE
|
7431 |
coppafish/pipeline/run.py |
sha256=DrY2f6yAKpnNf_sThdWIGsCoPcP-JvWyHt1sQbzVfiM
|
11862 |
coppafish/pipeline/stitch.py |
sha256=e1Stnuf0I6VHzceY5wuWXdfsmNep38oYqIsjjoQJ0sk
|
9172 |
coppafish/plot/__init__.py |
sha256=OHQuAbFVCz61tlLk8c5YK58-PRLi-64903TJ17dq-OY
|
725 |
coppafish/plot/raw.py |
sha256=BJul3vWee2moxauPPfEXmrZDNS0I4Oj9p7x4Z03smic
|
5535 |
coppafish/plot/call_spots/__init__.py |
sha256=S5dy5L2lVu7DPkQSDhUgjAELHZVbIKPvmuGBpxrVqCg
|
224 |
coppafish/plot/call_spots/background.py |
sha256=jeAJ6eCv01xFVWjhpsUgbZ-FECMg8zpYS6ujv8ZZBY0
|
13047 |
coppafish/plot/call_spots/bleed_matrix.py |
sha256=qGxxmPv7IMvm62LGm1VLoft_Z5UuG_dCKbro428bG34
|
7198 |
coppafish/plot/call_spots/dot_product.py |
sha256=e_MEXBdjmfCJsKTPVv36Uz_B0Mb21OqJuGuMEPVmhks
|
19801 |
coppafish/plot/call_spots/gene_counts.py |
sha256=KeQ3kDIysAW01FHI7_vRl0NisICKngy4y38FI1fH_Kg
|
15515 |
coppafish/plot/call_spots/scaled_k_means.py |
sha256=hutvSsuyybCxEIFR8baWhqW7_ItVvJrLC9yA0hR3GRM
|
5853 |
coppafish/plot/call_spots/score_calc.py |
sha256=M2EC_JDr3nYMlyBf0tS6DNivPycQCAPtGl0Wy4nOOzo
|
3664 |
coppafish/plot/call_spots/spot_colors.py |
sha256=b6xShQivO-mH0aa49i3SMEVLpAygdPhzeQD8DdmqvKE
|
23362 |
coppafish/plot/call_spots/weight.py |
sha256=7VeXEecHDPd4P4CFCV14ijPWQt9g_L7QUGsCStd7tFE
|
14714 |
coppafish/plot/extract/__init__.py |
sha256=tC1zqmTaxuSzdFSK4EBJkA-JKo5nzH5C-yPnMxXT_vU
|
104 |
coppafish/plot/extract/diagnostics.py |
sha256=BCeJNSf03YKmQKVkbKbONConYdjik3tmLIh8WmKNSDY
|
7365 |
coppafish/plot/extract/viewer.py |
sha256=fjdXB6ufAmQoMOaBxqmHn2yLTnaZ7ts11ncmv-t2f3Y
|
14020 |
coppafish/plot/find_spots/__init__.py |
sha256=vS7kO6_Xe0MB1b16s-KCJ_GUAEprmm8qaKeY7FkpnFo
|
69 |
coppafish/plot/find_spots/n_spots.py |
sha256=cc26Bzjraa3QuBpWfTzBvkzzR1eitku7T5nThWm8Elk
|
3547 |
coppafish/plot/find_spots/viewer.py |
sha256=dP7TlQLilyX6r3rJ9smlkyJ5CbDnRyl_XS3l00jUczk
|
16550 |
coppafish/plot/omp/__init__.py |
sha256=NtCYd-2vCv3H2eKpD_GxGxvJUHclhl010NfXD4c4W4Y
|
142 |
coppafish/plot/omp/coefs.py |
sha256=ghGM1iH6LYsGhmQLUuE1CE4eOtSJbdP0u3p5-78MH3c
|
16468 |
coppafish/plot/omp/score_hist.py |
sha256=Og8X7iCqiGviFHFK1-bVrO-vPsdCyCEi3k67AXWLvqs
|
16378 |
coppafish/plot/omp/score_shape.py |
sha256=vwMDfp2RT4oIsmsCojRj47_WvY0sTJYemIM_snnbrZk
|
12576 |
coppafish/plot/omp/track_fit.py |
sha256=knIwm1FHya-Uy1IVRjAJYaDG1Y1qHbojcMEIr8gZkWM
|
4525 |
coppafish/plot/register/__init__.py |
sha256=II_pjtVELCUAhX4LvIFXk8i3rwBFr-hQJutRfgrpsJY
|
171 |
coppafish/plot/register/diagnostics.py |
sha256=L5EQTJeh7ePGHeF8b9VWqkxpH_1qHIa2C3hIOtnLc90
|
10307 |
coppafish/plot/register/icp.py |
sha256=Q2U54Lky0cFaLe0OU0h9Hdf0RpB8uhdouz3_mGCKgwE
|
20455 |
coppafish/plot/register/shift.py |
sha256=346ZtzA6qIiB9mX3S81xLjXzWhh-5whJAWttnW0ceEs
|
6275 |
coppafish/plot/results_viewer/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
coppafish/plot/results_viewer/base.py |
sha256=84OxtpZtbwvYMW9FOW5Y19QGs5NubF2KxNwapAX2gq8
|
28947 |
coppafish/plot/results_viewer/cellClassColors.json |
sha256=zi2iKWugcnMLmFIQ1a4Mo69I6AJOtDxB8-Cuy7h554o
|
5647 |
coppafish/plot/results_viewer/cell_color.csv |
sha256=J-GSctmx8GPqCsevIu3oWCQvQ4fKSG05qMhA29Jw4kI
|
2529 |
coppafish/plot/results_viewer/gene_color.csv |
sha256=rFf3ewb2QuU1H3q1kogeN5k0peZGcsSyzpWJcCgO9QI
|
3826 |
coppafish/plot/results_viewer/legend.py |
sha256=U0w285cjyBS8WH1wcfWXrDpVt6u9HO7UpMnjUJ9S4T4
|
5848 |
coppafish/plot/stitch/__init__.py |
sha256=Kqq8kSS-hp9phJ34Oo5crG9bKc7hYvevGRHK6G-PTKY
|
177 |
coppafish/plot/stitch/diagnostics.py |
sha256=czvMm_e4_NYhZRqCtp7XNnX1x_rVU-tOTY-L0_bfyjo
|
10944 |
coppafish/plot/stitch/point_clouds.py |
sha256=Vy6zALCws9wZSDc5Ikj8qqsl4nUrZ1NZxIhdxkuRBJs
|
17088 |
coppafish/plot/stitch/shift.py |
sha256=TEI0b2zAWwr5u5eqB0hXAVXEyRlEgDrIiO83Fxq5m0g
|
16115 |
coppafish/register/__init__.py |
sha256=dwtgrNH-b1Vnyrs_nYxJK8BSiulrM94muB8sgjdnXXo
|
164 |
coppafish/register/base.py |
sha256=_-4Mol4JtkAqU85MLVf-jCCfxB6jrqA-M8x5H8qV4iM
|
24768 |
coppafish/register/check_transforms.py |
sha256=9AN5mYcdoGEuKbwfLWKXRHb1GkJFAGRgd16drXRUejc
|
6427 |
coppafish/setup/__init__.py |
sha256=-wlGIybpyTx15P4Z36AzDvKFSW2l7xotIbxB-l_dcVI
|
136 |
coppafish/setup/config.py |
sha256=nuzIhEgkqFj2wz2L7jeWrvLoEfdYOa0V3uDHV8IXLcs
|
15853 |
coppafish/setup/dye_camera_laser_raw_intensity.csv |
sha256=ZSbUHAcPxzD7lUkik1w_CsaZaavyb4WGEvzLbXyIFLM
|
11624 |
coppafish/setup/file_names.py |
sha256=_i-9-L89Qpuzu-NiLK6pK2yRdaJ4Ll7Yyu26LJyd8l0
|
4769 |
coppafish/setup/notebook.py |
sha256=6xzKEFS-EelIrfbze-HJdwily2XpjVKEDa_Y3vKB5fk
|
38352 |
coppafish/setup/notebook_comments.json |
sha256=sNR4K3Z0Ao0evKdbq7vlLxrEJi5lB5lUlf82GZJxxGY
|
37546 |
coppafish/setup/settings.default.ini |
sha256=mCn2gLs0g2jMtJ1ttWPyn8QMMWTiV_KdMAnNAk6qcws
|
40645 |
coppafish/setup/tile_details.py |
sha256=EBEqzaWZwNFwpEem4BPoEkKeeyMi8kgqR8Gqx3nM3VY
|
4893 |
coppafish/spot_colors/__init__.py |
sha256=KMpjZCcZXuS2EMnZ4H-5yINCdFKzhMhUlBiXuIpV5MQ
|
175 |
coppafish/spot_colors/base.py |
sha256=hEGX0cZCrHmziw4zDYFiXr9FeNFvAfpyZme-5qKdR2o
|
10529 |
coppafish/spot_colors/base_optimised.py |
sha256=Nna3ikEPd3ZZ0ppfHufuL38ScMqL4dgF2zFJR8DewxI
|
11000 |
coppafish/stitch/__init__.py |
sha256=lzvk8Tk11klCd_MDbdIt4PbXUrDEx8Br_wmxXrdsSuY
|
208 |
coppafish/stitch/check_shifts.py |
sha256=3_As7Sjzkatc623Ptq75qAQ3rbHvjk56ziZZjXdiuzk
|
6114 |
coppafish/stitch/shift.py |
sha256=9jsZPBf1uSn1E_DHwVGMYbwXLK1h8yKTRUUJM6nx6qs
|
31264 |
coppafish/stitch/starting_shifts.py |
sha256=bfZxJu5iMcLQYz_dcgNPm4RJ0Nx4bX5jwqggka-Ris0
|
2981 |
coppafish/stitch/tile_origin.py |
sha256=W8rMOitUJwW8Y0RU1iCpukJwBLHvTYX3Eof6larGkPU
|
2937 |
coppafish/utils/__init__.py |
sha256=U1tXNO1p7Nr1HRFyDpkqoJuYXiRt_zmPKJUv1L-Z4X8
|
177 |
coppafish/utils/base.py |
sha256=vNfsjglEFYbtluxlXbi2djfAoLMplUlbJ-WGuDEMlp8
|
1784 |
coppafish/utils/errors.py |
sha256=LqD8x0bayM_IqvTY4yCKAx2YPjXEZtB3pkwNjR-2-6I
|
10001 |
coppafish/utils/matlab.py |
sha256=ZlAGsfcL7_2vPvc40JBB39hhtMYrJaxwAbzSow6yv40
|
6438 |
coppafish/utils/nd2.py |
sha256=6uTi4k1b5mKi97AckbpoH_lFGYuik4PwWMGkGYzShxo
|
9133 |
coppafish/utils/npy.py |
sha256=XcWfMVEQ71Rqr8dD2yeHd7U8_1-gD36sW42Qe-eVAO0
|
14045 |
coppafish/utils/pciseq.py |
sha256=ekJu0RvomMOWNW-7aR9bE184jnyqkr44Tl1tWtAnpG8
|
3412 |
coppafish/utils/raw.py |
sha256=cQHH3KnGRB-hBfmRRBk4Cduju6hQwqboLBZL0a7HnDs
|
6459 |
coppafish/utils/spot_images.py |
sha256=BBf8Ojq_g-0q1afBs3TQ8S9hLUrjyLRajUkYgJHNP70
|
7588 |
coppafish/utils/strel.py |
sha256=g9hCykNFzdGkcO9vpBeqqwZ1fs3-yFZdkr6wHWFZzyQ
|
10312 |
coppafish/utils/warnings.py |
sha256=IkyvpCWF4jsvsbQj6DKRAXw3E2URXrkETJlpcOPK4Xc
|
280 |
coppafish/utils/morphology/__init__.py |
sha256=usg5IX1jTkR3OVG_SUZqP8S9BN4UO-vzUiLI0qaOES0
|
164 |
coppafish/utils/morphology/base.py |
sha256=cjzKx7xMQ4nkMpHOq6pG74NrVeu27JlaoT5__0NxzlA
|
6790 |
coppafish/utils/morphology/filter.py |
sha256=EtyhxBevrt-aud8_fzcYI-dKiCqJ7JlCRJOGKqpPtfI
|
5576 |
coppafish/utils/morphology/filter_optimised.py |
sha256=4yLaLoe2UnRjhPxQXDaL6g5RKCbDW9XTP9_Ef4jZZig
|
6583 |
coppafish-0.1.6.dist-info/LICENSE.md |
sha256=qOdLQSdSeGeM_-XRVK0E11nr9mxCMdhzjld3uISwfHw
|
1070 |
coppafish-0.1.6.dist-info/METADATA |
sha256=vqEKOGRyGD0isu0NKz3H6RyHknzKlayFd5Wu4us8KCQ
|
2614 |
coppafish-0.1.6.dist-info/WHEEL |
sha256=G16H4A3IeoQmnOrYV4ueZGKSjhipXx8zc8nu9FGlvMA
|
92 |
coppafish-0.1.6.dist-info/top_level.txt |
sha256=iENe3qdYKXgnHWKtj-HoreVWqB1bjl8-1JjGTXxi9cU
|
10 |
coppafish-0.1.6.dist-info/RECORD |
— |
— |