compassdock

View on PyPIReverse Dependencies (0)

0.1.4 compassdock-0.1.4-py3-none-any.whl

Wheel Details

Project: compassdock
Version: 0.1.4
Filename: compassdock-0.1.4-py3-none-any.whl
Download: [link]
Size: 255485
MD5: d9b4558212722713ec3b34e95d0e16ff
SHA256: dd6bc132cc26dd3a33cabf3dee8981a45cf79d46081953116e1342077bb4f8d6
Uploaded: 2024-10-08 13:06:10 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: compassdock
Version: 0.1.4
Summary: A comprehensive accurate assessment approach for deep learning based molecular docking
Author-Email: Ahmet Sarigun <Ahmet.Sariguen[at]mdc-berlin.de>
Maintainer-Email: Ahmet Sarigun <Ahmet.Sariguen[at]mdc-berlin.de>
License: Modified MIT License for Academic and Non-Commercial Use Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software for academic, research, and educational purposes without restriction, including without limitation the rights to use, copy, modify, merge, publish, and distribute copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: Commercial use of this software or any derivative works is prohibited without explicit permission and a separate commercial license from the copyright holders. The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Classifier: Development Status :: 3 - Alpha
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3.11
Requires-Python: <3.12,>=3.11
Requires-Dist: torch (==2.3.0)
Requires-Dist: torchvision (==0.18.0)
Requires-Dist: torchaudio (==2.3.0)
Requires-Dist: PyYAML
Requires-Dist: scipy
Requires-Dist: networkx[default]
Requires-Dist: biopython
Requires-Dist: rdkit-pypi
Requires-Dist: e3nn
Requires-Dist: spyrmsd
Requires-Dist: pandas (==2.0.0)
Requires-Dist: biopandas
Requires-Dist: prody (==2.4.1)
Requires-Dist: torch-geometric (==2.5.3)
Requires-Dist: rdkit (==2023.9.6)
Requires-Dist: py3dmol (==2.1.0)
Requires-Dist: prolif (==2.0.3)
Requires-Dist: pybel (==0.15.5)
Requires-Dist: seaborn
Requires-Dist: omegaconf
Requires-Dist: ml-collections
Requires-Dist: dm-tree
Requires-Dist: modelcif (==1.0)
Requires-Dist: einops (==0.8.0)
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 4835 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.1.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
compassdock/__init__.py sha256=zOFZb6fghmVwQpxddAiXKCI8ah02JWvmZhpa0lw7u1E 47
compassdock/compass.py sha256=YdnFQa0G7eDVRrZ2eQ_97sBG1I3ZIxX6eQi55u9gCxQ 6705
compassdock/compassdock.py sha256=FP_108LP6UlGyr1_MXrWSvQF10BAPw5P2EcNrsV25sA 14069
compassdock/config.py sha256=VkcV66xuMbPzn9g8nZ22KURCUDKblncSUsZ0WvJYLaM 5856
compassdock/esm_processing.py sha256=myDVQwcO63Qf8d9ZikU2xu1jXihUDe1Q99eVQGQqVv8 8453
compassdock/finetune.py sha256=PzSNj7eP3ryHs6Vrjj3BszIPZ9X8IkqyAyhvQRebqv8 13939
compassdock/inference_wrap.py sha256=tzvaR8aZbn5N6U0FnkhJHEQMhcaut5ulcvH3gDLdcgg 13673
compassdock/training.py sha256=YGqfBPibbxZbMlhPRh3EkfNy0SLvd_yevwNBjrY-KbE 26244
compassdock/AA_Score_Tool/AA_Score.py sha256=ojKZ0Zeipwcu1x4-WrXr5Yhc5uB9LXsq0b9jomnLOz4 11924
compassdock/AA_Score_Tool/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
compassdock/AA_Score_Tool/interaction_components/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
compassdock/AA_Score_Tool/interaction_components/config.py sha256=VW6JiVO3zWOxTvTshsdRDzL1nYC90lcJQabhEhZauSo 13054
compassdock/AA_Score_Tool/interaction_components/detection.py sha256=B6iNrICs9If3Y7hPZbjRlh-ibbuA0VXLstshbJx1sJI 29693
compassdock/AA_Score_Tool/interaction_components/plinteraction.py sha256=Pv_K_Hea9W8L3IPJH1HETjN0SIslCygWONspcuxkjEA 58038
compassdock/AA_Score_Tool/interaction_components/utils.py sha256=UGtRR6Uf-bP97nPtxu1LEvCSOxLarA1yynf0WjQHKgQ 15705
compassdock/AA_Score_Tool/utils/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
compassdock/AA_Score_Tool/utils/electrostatic.py sha256=fCPk6H7NwonHr8xXifdbpCZrPL3Uqnxj0X2jnX1qEqw 3465
compassdock/AA_Score_Tool/utils/get_pocket_by_biopandas.py sha256=F-rOpibkH7BXoFciOanxZP1B1TMBCHpwgngbARsZMBI 4222
compassdock/AA_Score_Tool/utils/hbonds.py sha256=TFHYX-HOfxfPU7uzrEjjy3tKpL07K8CrLroLYfhEHj0 6474
compassdock/AA_Score_Tool/utils/hydrophobic.py sha256=4xBOHDARY15wEsxsA4OEetfgVk1ZpE6df-MVs_xYwoc 750
compassdock/AA_Score_Tool/utils/vdw.py sha256=bxrwsNr2yWhSDNOlmjE82HDgYlOXSEiTDmT4X7zE3A0 2421
compassdock/DiffDock/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
compassdock/DiffDock/evaluate.py sha256=jsV3H7e1tX_7rapyfUHpUIobkKHKitAEUN2cZOUiYfI 56531
compassdock/DiffDock/inference.py sha256=6tQlC0cGDxRvN_Pe7FTk-KDN8xnQJ5syXKrBOeXVP_8 15510
compassdock/DiffDock/inference_new.py sha256=D5UBM8JN9e7nY3zJyDzp4b4mWLv0IaMWVzt5hpn1rc4 23040
compassdock/DiffDock/train.py sha256=afrOkDEQ8Zj9fHVt5i8MG_uzX-GZuAau78TRyPitNj4 12660
compassdock/DiffDock/confidence/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
compassdock/DiffDock/confidence/confidence_train.py sha256=bzrD_REQxmWg87hx4Wx8nnZuKQ1nbt0pGJKnrmxz4Po 18532
compassdock/DiffDock/confidence/dataset.py sha256=9hwnkBPuDIVdxe8Rxz5mDZYMp7ZQDaTSIjqiGlRcuR8 17875
compassdock/DiffDock/data/splits/finetune/split.py sha256=bxmaRgMN6pEECxOKOJ-Ll15z2AT2hOw9ox7mBV1p2NU 405
compassdock/DiffDock/datasets/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
compassdock/DiffDock/datasets/conformer_matching.py sha256=Rt3Td9VIdaRFlEAdxSB4cC3uZZJ-ub4oyrmzupy349s 3033
compassdock/DiffDock/datasets/constants.py sha256=lDJMTcgJCuHoJWYRY2EcsWEf_hCqThuvzm9UEj5bx6A 8079
compassdock/DiffDock/datasets/dataloader.py sha256=vv5Kj0REeg58sVI6vb_OjMP9r4KbiL5kKFW5chHlNpg 3642
compassdock/DiffDock/datasets/esm_embedding_preparation.py sha256=z53EJirbyYdQXwEYs5YfQ-i7EvPFN_WO4Zn-4D2chLo 3221
compassdock/DiffDock/datasets/esm_embeddings_to_pt.py sha256=qTxNEfTj1hb7sJSGujkjpVYg3F6azIdQaoE1VGrNGEA 628
compassdock/DiffDock/datasets/loader.py sha256=9BwUym_Sk4hr3fVp8hfA3l3wN3D-YTB5W1gnMI7ZXzE 7892
compassdock/DiffDock/datasets/moad.py sha256=YacGtNCqMYKE9KtY7TKGx6eZno6LP1N3QzO9cYwFqhk 29361
compassdock/DiffDock/datasets/parse_chi.py sha256=6Cye3pwl15G_XRgIlPZYqF_Rdekaccg5NHZSpHuDhss 4464
compassdock/DiffDock/datasets/pdb_dock.py sha256=Bnpnw4CHX4ivM6AVEMpOCxvM_BOOCxyBkSLzkd7Pv8E 25722
compassdock/DiffDock/datasets/pdbbind.py sha256=9_7JXcbau8O2yKlN1Tg9dnKxy6-rVuMaqxFF0WDS5yk 25442
compassdock/DiffDock/datasets/process_mols.py sha256=arcNbPi582cMKHph18osDOSrShV5g0DvIwQCKPUOFmg 21968
compassdock/DiffDock/datasets/sidechain_esm_embeddings_to_pt.py sha256=sL_wd8jmq79paXLSNSaByM0YcZatmQ4pV6cKOt7SICY 1213
compassdock/DiffDock/models/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
compassdock/DiffDock/models/aa_model.py sha256=X2JxNxi35X86iQzYffQlzLwejm8Jt_XPVUOIR5DyZPw 39812
compassdock/DiffDock/models/cg_model.py sha256=OsxPcCJuAEqDdFHSuwotoo9UgjYLkKZqsB0BM2zHeFo 37883
compassdock/DiffDock/models/layers.py sha256=mV-87AN26KlKg3jHSjZrhdDs5lrnlkl_dK_qNo07K2Y 4453
compassdock/DiffDock/models/old_aa_model.py sha256=yqC3Dn2VNE_P0VXYpyybfz31SyZwL5-AqVIuAnDVkzw 31550
compassdock/DiffDock/models/old_cg_model.py sha256=jxTbEQHYwxf8QnkH91-GZ6anODTHaGAe31kevJ6wkFg 33350
compassdock/DiffDock/models/tensor_layers.py sha256=wyxAXwTvF8KDzBePcP9f3aO_CCap4kHa7Y_qntTEsKs 11222
compassdock/DiffDock/spyrmsd/__init__.py sha256=a3bFW1ZSVI1AEGnMl1TCW1X-8asYaMiWYW5NmnsMUIQ 482
compassdock/DiffDock/spyrmsd/__main__.py sha256=ne0HWa7tud8Oa4R--_FeoqjqF7VGO3Fuj_nJB6B42JA 1906
compassdock/DiffDock/spyrmsd/_version.py sha256=IICAz1nW7CiVPP6Tjzlwb4-oo5_jyZ4ygtc3fIgxc08 23784
compassdock/DiffDock/spyrmsd/constants.py sha256=1Wc12I0cWcML4B4LRDdaUH9TTBLBpPsEr-bJxn0rkYA 4173
compassdock/DiffDock/spyrmsd/due.py sha256=yr8sDcJQ73C9fpq_bEWN20WaII56r6PRnieWmln9vZc 2019
compassdock/DiffDock/spyrmsd/exceptions.py sha256=zI_iw1Xfx1EvBYslitRxwkldwyZINqGPR_7LzezeJj0 107
compassdock/DiffDock/spyrmsd/graph.py sha256=gBNMcbxwDVqgx6heLbeFGwMq4CEujzmCF0tFu6pEZJI 2292
compassdock/DiffDock/spyrmsd/hungarian.py sha256=xSqqa1MJZ08w1K3emy0w2O4AFH6mADtbrVkutX2Waqo 2878
compassdock/DiffDock/spyrmsd/io.py sha256=sDne9H4Q3LM5W1nX0mO3zz8iTsv2UwxvLtE6C70nUAc 1649
compassdock/DiffDock/spyrmsd/molecule.py sha256=RtVeTfITZa5m8mnK5rpHCNGr21dFzumrm2885oNV84g 6913
compassdock/DiffDock/spyrmsd/qcp.py sha256=pzQI88jpAQf1T1owejR2-bJxBDz1oO7crflrYX_4d38 7125
compassdock/DiffDock/spyrmsd/rmsd.py sha256=ZUTQ7o62i9cDK83_R7fXUKSDLFPYcHVe6J7IC3wSwW8 10280
compassdock/DiffDock/spyrmsd/utils.py sha256=0G6gpQ-f0tG5eGVpS13FFCiVfMKVtVhrAhAK5vKCGlE 3418
compassdock/DiffDock/spyrmsd/graphs/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
compassdock/DiffDock/spyrmsd/graphs/_common.py sha256=EkUrMO501Q_bJtdYaf7u3NEzetVpit-TKS6gAz7MgmI 324
compassdock/DiffDock/spyrmsd/graphs/gt.py sha256=cAFZ6h4tuge614OnEIWZ7idcdGO0Nclfgb-vUuz-R_0 4802
compassdock/DiffDock/spyrmsd/graphs/nx.py sha256=-lUNjE3rT1jyztimz20I2q35aTge7Moc11I1D35wcGI 3699
compassdock/DiffDock/spyrmsd/optional/__init__.py sha256=BJwfawp1DAF6wptAPVQxzoNOS16UniRSJa9uQ2ZUhG0 197
compassdock/DiffDock/spyrmsd/optional/obabel.py sha256=rZw1syyQKntMljrI_QGLouRSMi46AwhJDkliYup_JGQ 3160
compassdock/DiffDock/spyrmsd/optional/rdkit.py sha256=ERqu-S3MGFjgMQX0JmooWwTNnw302MS9zhEyTNZ131k 4465
compassdock/DiffDock/utils/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
compassdock/DiffDock/utils/diffusion_utils.py sha256=ESlVHdC9mA5XkDlwHy8cVVb2rIXJBWXIa2SsBcA84cw 8425
compassdock/DiffDock/utils/download.py sha256=ehbeRMfQXdfjnsYU-BhoSeg0X8lPmBxwx5kXVIM4nyM 462
compassdock/DiffDock/utils/geometry.py sha256=-5B-NrHG7R7ifaVnhs3yFv-H-ejMayQQFOdIcCq68PM 10687
compassdock/DiffDock/utils/gnina_utils.py sha256=J_ZejGcv4vaA0VubsCKEQdM71PiQlAE1QHQoUQ0SfYg 3499
compassdock/DiffDock/utils/inference_utils.py sha256=2DS-ve1VAIK6AtfQLO6naSR7mYX9fgE9TSKX6oxXg9Y 10340
compassdock/DiffDock/utils/molecules_utils.py sha256=CmHJTFsL7s8nAvyDAkPeZt0R4voYZWe4GOJaUdib4ME 1093
compassdock/DiffDock/utils/parsing.py sha256=DhrCDEduzBYpOpH631uGPjsnDW7U1QWxRVoutoXcRO8 17248
compassdock/DiffDock/utils/precompute_series.py sha256=-kkd2nBfhheMgrgW5XsGPErVDIkoEKary4Jjf--Rgrc 53
compassdock/DiffDock/utils/print_device.py sha256=6sYLL5482EPu7NL6JlK5DGgIfPaAhPtoikIZPc7AwtQ 562
compassdock/DiffDock/utils/sampling.py sha256=qPOin7wE-52aRDmEiHSL6ZZ0FYTzFOz-mK-dWgB1QuI 14828
compassdock/DiffDock/utils/so3.py sha256=0zDV90LbE2-ZMNucdLwIHRvljLFoS_F27lR6jY2-8pY 3599
compassdock/DiffDock/utils/torsion.py sha256=TcjYWFvCSkOTW4Cjecy-TEJdMj7PDxJxsKvFj7GzxK4 5854
compassdock/DiffDock/utils/torus.py sha256=Ss2vwpnXjYv5fkxN3XpN-lpLfk0d22utir8BiMrQW78 2538
compassdock/DiffDock/utils/training.py sha256=Loaecqkx2dKNc-CSWsSlftUm7N9bWB5vT8Son25fvLM 19015
compassdock/DiffDock/utils/utils.py sha256=zCK-ZSh5QmbAadI3LyKURgPbtDCnD2zBDBHGnS7QDpA 21283
compassdock/DiffDock/utils/visualise.py sha256=zVT-RGEroNv0ozewndpAZAZHI71uL_8JQBvlaCkl5WA 2134
compassdock/posecheck/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
compassdock/posecheck/setup.py sha256=YeS1Z7rmuK48N0cvo4eOYOwOLKieG6lJvY7-9-poNjo 935
compassdock/posecheck/posecheck/__init__.py sha256=gPNpaimmJURowRsjwpL_m9seizBJH0dJGfwlvk2cbcY 28
compassdock/posecheck/posecheck/docking_eval.py sha256=ZlqYp8GQk_6jeugVV0MeDa833n--DcKk9QbUJb4-9Fw 3342
compassdock/posecheck/posecheck/eval.py sha256=MR2A0VamCKkQVnyf0wMG1MGDJ35mEv6ZQAcdNH7SCf0 884
compassdock/posecheck/posecheck/main.py sha256=afo3p6Tcjv5riAws0yx80OsVADKn3KqZtEbLBG_Aku8 6698
compassdock/posecheck/posecheck/posecheck.py sha256=wWt023zgr0HYQyKXD6HLEa0hgU-PRVb_l88y-uVlOqg 6752
compassdock/posecheck/posecheck/data/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
compassdock/posecheck/posecheck/data/datasets.py sha256=Aez9z3dc81Gyu1H6L4T09ijspRLw2k2pLHPF74_zEZY 24747
compassdock/posecheck/posecheck/utils/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
compassdock/posecheck/posecheck/utils/chem.py sha256=aTbqasz7ktjA10Ue3jfflE3s0uxXi5Iu1lLz9OnPzhU 1638
compassdock/posecheck/posecheck/utils/clashes.py sha256=m8dyuriqFqOJHQQX9xMAZUX1Hu6Dw8WUe4zGJ_wCLdo 4168
compassdock/posecheck/posecheck/utils/constants.py sha256=qxqXupBeZchmrT5RX9Hh2bsCapQzYhLaCrg-BXGVnGI 1057
compassdock/posecheck/posecheck/utils/docking.py sha256=3RCJr0yEfKXX4H5gbzegV2bCuB51gEe4zclx9j4ZqCo 6023
compassdock/posecheck/posecheck/utils/docking_utils.py sha256=3lTlriuDoNBtsCSvyspgo9rGtTUpSELQANPjDBxDGHo 6585
compassdock/posecheck/posecheck/utils/interactions.py sha256=akUV7JsDEEVE4P3yo5FYq70yl_BDpF_5wD5N6Knvffw 2981
compassdock/posecheck/posecheck/utils/loading.py sha256=MWvc5_gkD-7AWr6zaYFgvN5UEpkJjiMRKCwMmtDZvrk 5792
compassdock/posecheck/posecheck/utils/strain.py sha256=9VnFguoqIfdHWSEGx93BYzJiyBvc7Cx0MqX6OtDtTKY 4981
compassdock/posecheck/posecheck/utils/validators.py sha256=NKoEZhCLX4YSlVAGo_wbfizKS8pRwTBcZQ5Q5dNjmp8 1044
compassdock/posecheck/tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
compassdock/posecheck/tests/test_chem.py sha256=872DYO2nvlEQwxI087bx1Pdm-v29wN58Y-dGOofmjhA 2004
compassdock/posecheck/tests/test_clashes.py sha256=HGlm9dGMrg68UM7akYxX0xr2bxOtyQsyC8KC6FFvVTw 1099
compassdock/posecheck/tests/test_interactions.py sha256=JjmpDsrtGlMNGlwhq4UkYVnqngaaQsPrUKixqjpWiNg 1470
compassdock/posecheck/tests/test_loading.py sha256=LUEM0QwQSJrowQBAIbXL02Y9CfeX6BheQWYQsCA45tI 940
compassdock/posecheck/tests/test_posecheck.py sha256=E8HdVCo7hrbhe-JALjHUpD8rIDcvUigudP6p8PB8aY8 1321
compassdock/posecheck/tests/test_reduce.py sha256=k6IIBZOYudIrs7eHTJR1wWdg4maRFvX1y0aXxIgBnbw 654
compassdock/posecheck/tests/test_strain.py sha256=f3O1x-WznjhEsBQfVDHBm-uYLrwce0mQmU3t_TqkBaA 710
compassdock-0.1.4.dist-info/LICENSE sha256=b30v2kZuFXNPO9QY6PyfEHuXW-bZrVPoWq6wzMqP-oQ 1269
compassdock-0.1.4.dist-info/METADATA sha256=xs-c-15mciOJyKS0LT2mRNl24Yo74gmfKWE5To4tYNM 7491
compassdock-0.1.4.dist-info/WHEEL sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ 91
compassdock-0.1.4.dist-info/top_level.txt sha256=1vZ-QNJDTy-asZEmjUnDR9Zv6sVHJZjrlHvzVNAd2rc 12
compassdock-0.1.4.dist-info/RECORD

top_level.txt

compassdock