Path |
Digest |
Size |
compassdock/__init__.py |
sha256=zOFZb6fghmVwQpxddAiXKCI8ah02JWvmZhpa0lw7u1E
|
47 |
compassdock/compass.py |
sha256=YdnFQa0G7eDVRrZ2eQ_97sBG1I3ZIxX6eQi55u9gCxQ
|
6705 |
compassdock/compassdock.py |
sha256=FP_108LP6UlGyr1_MXrWSvQF10BAPw5P2EcNrsV25sA
|
14069 |
compassdock/config.py |
sha256=VkcV66xuMbPzn9g8nZ22KURCUDKblncSUsZ0WvJYLaM
|
5856 |
compassdock/esm_processing.py |
sha256=myDVQwcO63Qf8d9ZikU2xu1jXihUDe1Q99eVQGQqVv8
|
8453 |
compassdock/finetune.py |
sha256=PzSNj7eP3ryHs6Vrjj3BszIPZ9X8IkqyAyhvQRebqv8
|
13939 |
compassdock/inference_wrap.py |
sha256=tzvaR8aZbn5N6U0FnkhJHEQMhcaut5ulcvH3gDLdcgg
|
13673 |
compassdock/training.py |
sha256=YGqfBPibbxZbMlhPRh3EkfNy0SLvd_yevwNBjrY-KbE
|
26244 |
compassdock/AA_Score_Tool/AA_Score.py |
sha256=ojKZ0Zeipwcu1x4-WrXr5Yhc5uB9LXsq0b9jomnLOz4
|
11924 |
compassdock/AA_Score_Tool/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
compassdock/AA_Score_Tool/interaction_components/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
compassdock/AA_Score_Tool/interaction_components/config.py |
sha256=VW6JiVO3zWOxTvTshsdRDzL1nYC90lcJQabhEhZauSo
|
13054 |
compassdock/AA_Score_Tool/interaction_components/detection.py |
sha256=B6iNrICs9If3Y7hPZbjRlh-ibbuA0VXLstshbJx1sJI
|
29693 |
compassdock/AA_Score_Tool/interaction_components/plinteraction.py |
sha256=Pv_K_Hea9W8L3IPJH1HETjN0SIslCygWONspcuxkjEA
|
58038 |
compassdock/AA_Score_Tool/interaction_components/utils.py |
sha256=UGtRR6Uf-bP97nPtxu1LEvCSOxLarA1yynf0WjQHKgQ
|
15705 |
compassdock/AA_Score_Tool/utils/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
compassdock/AA_Score_Tool/utils/electrostatic.py |
sha256=fCPk6H7NwonHr8xXifdbpCZrPL3Uqnxj0X2jnX1qEqw
|
3465 |
compassdock/AA_Score_Tool/utils/get_pocket_by_biopandas.py |
sha256=F-rOpibkH7BXoFciOanxZP1B1TMBCHpwgngbARsZMBI
|
4222 |
compassdock/AA_Score_Tool/utils/hbonds.py |
sha256=TFHYX-HOfxfPU7uzrEjjy3tKpL07K8CrLroLYfhEHj0
|
6474 |
compassdock/AA_Score_Tool/utils/hydrophobic.py |
sha256=4xBOHDARY15wEsxsA4OEetfgVk1ZpE6df-MVs_xYwoc
|
750 |
compassdock/AA_Score_Tool/utils/vdw.py |
sha256=bxrwsNr2yWhSDNOlmjE82HDgYlOXSEiTDmT4X7zE3A0
|
2421 |
compassdock/DiffDock/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
compassdock/DiffDock/evaluate.py |
sha256=jsV3H7e1tX_7rapyfUHpUIobkKHKitAEUN2cZOUiYfI
|
56531 |
compassdock/DiffDock/inference.py |
sha256=6tQlC0cGDxRvN_Pe7FTk-KDN8xnQJ5syXKrBOeXVP_8
|
15510 |
compassdock/DiffDock/inference_new.py |
sha256=D5UBM8JN9e7nY3zJyDzp4b4mWLv0IaMWVzt5hpn1rc4
|
23040 |
compassdock/DiffDock/train.py |
sha256=afrOkDEQ8Zj9fHVt5i8MG_uzX-GZuAau78TRyPitNj4
|
12660 |
compassdock/DiffDock/confidence/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
compassdock/DiffDock/confidence/confidence_train.py |
sha256=bzrD_REQxmWg87hx4Wx8nnZuKQ1nbt0pGJKnrmxz4Po
|
18532 |
compassdock/DiffDock/confidence/dataset.py |
sha256=9hwnkBPuDIVdxe8Rxz5mDZYMp7ZQDaTSIjqiGlRcuR8
|
17875 |
compassdock/DiffDock/data/splits/finetune/split.py |
sha256=bxmaRgMN6pEECxOKOJ-Ll15z2AT2hOw9ox7mBV1p2NU
|
405 |
compassdock/DiffDock/datasets/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
compassdock/DiffDock/datasets/conformer_matching.py |
sha256=Rt3Td9VIdaRFlEAdxSB4cC3uZZJ-ub4oyrmzupy349s
|
3033 |
compassdock/DiffDock/datasets/constants.py |
sha256=lDJMTcgJCuHoJWYRY2EcsWEf_hCqThuvzm9UEj5bx6A
|
8079 |
compassdock/DiffDock/datasets/dataloader.py |
sha256=vv5Kj0REeg58sVI6vb_OjMP9r4KbiL5kKFW5chHlNpg
|
3642 |
compassdock/DiffDock/datasets/esm_embedding_preparation.py |
sha256=z53EJirbyYdQXwEYs5YfQ-i7EvPFN_WO4Zn-4D2chLo
|
3221 |
compassdock/DiffDock/datasets/esm_embeddings_to_pt.py |
sha256=qTxNEfTj1hb7sJSGujkjpVYg3F6azIdQaoE1VGrNGEA
|
628 |
compassdock/DiffDock/datasets/loader.py |
sha256=9BwUym_Sk4hr3fVp8hfA3l3wN3D-YTB5W1gnMI7ZXzE
|
7892 |
compassdock/DiffDock/datasets/moad.py |
sha256=YacGtNCqMYKE9KtY7TKGx6eZno6LP1N3QzO9cYwFqhk
|
29361 |
compassdock/DiffDock/datasets/parse_chi.py |
sha256=6Cye3pwl15G_XRgIlPZYqF_Rdekaccg5NHZSpHuDhss
|
4464 |
compassdock/DiffDock/datasets/pdb_dock.py |
sha256=Bnpnw4CHX4ivM6AVEMpOCxvM_BOOCxyBkSLzkd7Pv8E
|
25722 |
compassdock/DiffDock/datasets/pdbbind.py |
sha256=9_7JXcbau8O2yKlN1Tg9dnKxy6-rVuMaqxFF0WDS5yk
|
25442 |
compassdock/DiffDock/datasets/process_mols.py |
sha256=arcNbPi582cMKHph18osDOSrShV5g0DvIwQCKPUOFmg
|
21968 |
compassdock/DiffDock/datasets/sidechain_esm_embeddings_to_pt.py |
sha256=sL_wd8jmq79paXLSNSaByM0YcZatmQ4pV6cKOt7SICY
|
1213 |
compassdock/DiffDock/models/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
compassdock/DiffDock/models/aa_model.py |
sha256=X2JxNxi35X86iQzYffQlzLwejm8Jt_XPVUOIR5DyZPw
|
39812 |
compassdock/DiffDock/models/cg_model.py |
sha256=OsxPcCJuAEqDdFHSuwotoo9UgjYLkKZqsB0BM2zHeFo
|
37883 |
compassdock/DiffDock/models/layers.py |
sha256=mV-87AN26KlKg3jHSjZrhdDs5lrnlkl_dK_qNo07K2Y
|
4453 |
compassdock/DiffDock/models/old_aa_model.py |
sha256=yqC3Dn2VNE_P0VXYpyybfz31SyZwL5-AqVIuAnDVkzw
|
31550 |
compassdock/DiffDock/models/old_cg_model.py |
sha256=jxTbEQHYwxf8QnkH91-GZ6anODTHaGAe31kevJ6wkFg
|
33350 |
compassdock/DiffDock/models/tensor_layers.py |
sha256=wyxAXwTvF8KDzBePcP9f3aO_CCap4kHa7Y_qntTEsKs
|
11222 |
compassdock/DiffDock/spyrmsd/__init__.py |
sha256=a3bFW1ZSVI1AEGnMl1TCW1X-8asYaMiWYW5NmnsMUIQ
|
482 |
compassdock/DiffDock/spyrmsd/__main__.py |
sha256=ne0HWa7tud8Oa4R--_FeoqjqF7VGO3Fuj_nJB6B42JA
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1906 |
compassdock/DiffDock/spyrmsd/_version.py |
sha256=IICAz1nW7CiVPP6Tjzlwb4-oo5_jyZ4ygtc3fIgxc08
|
23784 |
compassdock/DiffDock/spyrmsd/constants.py |
sha256=1Wc12I0cWcML4B4LRDdaUH9TTBLBpPsEr-bJxn0rkYA
|
4173 |
compassdock/DiffDock/spyrmsd/due.py |
sha256=yr8sDcJQ73C9fpq_bEWN20WaII56r6PRnieWmln9vZc
|
2019 |
compassdock/DiffDock/spyrmsd/exceptions.py |
sha256=zI_iw1Xfx1EvBYslitRxwkldwyZINqGPR_7LzezeJj0
|
107 |
compassdock/DiffDock/spyrmsd/graph.py |
sha256=gBNMcbxwDVqgx6heLbeFGwMq4CEujzmCF0tFu6pEZJI
|
2292 |
compassdock/DiffDock/spyrmsd/hungarian.py |
sha256=xSqqa1MJZ08w1K3emy0w2O4AFH6mADtbrVkutX2Waqo
|
2878 |
compassdock/DiffDock/spyrmsd/io.py |
sha256=sDne9H4Q3LM5W1nX0mO3zz8iTsv2UwxvLtE6C70nUAc
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1649 |
compassdock/DiffDock/spyrmsd/molecule.py |
sha256=RtVeTfITZa5m8mnK5rpHCNGr21dFzumrm2885oNV84g
|
6913 |
compassdock/DiffDock/spyrmsd/qcp.py |
sha256=pzQI88jpAQf1T1owejR2-bJxBDz1oO7crflrYX_4d38
|
7125 |
compassdock/DiffDock/spyrmsd/rmsd.py |
sha256=ZUTQ7o62i9cDK83_R7fXUKSDLFPYcHVe6J7IC3wSwW8
|
10280 |
compassdock/DiffDock/spyrmsd/utils.py |
sha256=0G6gpQ-f0tG5eGVpS13FFCiVfMKVtVhrAhAK5vKCGlE
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3418 |
compassdock/DiffDock/spyrmsd/graphs/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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0 |
compassdock/DiffDock/spyrmsd/graphs/_common.py |
sha256=EkUrMO501Q_bJtdYaf7u3NEzetVpit-TKS6gAz7MgmI
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324 |
compassdock/DiffDock/spyrmsd/graphs/gt.py |
sha256=cAFZ6h4tuge614OnEIWZ7idcdGO0Nclfgb-vUuz-R_0
|
4802 |
compassdock/DiffDock/spyrmsd/graphs/nx.py |
sha256=-lUNjE3rT1jyztimz20I2q35aTge7Moc11I1D35wcGI
|
3699 |
compassdock/DiffDock/spyrmsd/optional/__init__.py |
sha256=BJwfawp1DAF6wptAPVQxzoNOS16UniRSJa9uQ2ZUhG0
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compassdock/DiffDock/spyrmsd/optional/obabel.py |
sha256=rZw1syyQKntMljrI_QGLouRSMi46AwhJDkliYup_JGQ
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3160 |
compassdock/DiffDock/spyrmsd/optional/rdkit.py |
sha256=ERqu-S3MGFjgMQX0JmooWwTNnw302MS9zhEyTNZ131k
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4465 |
compassdock/DiffDock/utils/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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compassdock/DiffDock/utils/diffusion_utils.py |
sha256=ESlVHdC9mA5XkDlwHy8cVVb2rIXJBWXIa2SsBcA84cw
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8425 |
compassdock/DiffDock/utils/download.py |
sha256=ehbeRMfQXdfjnsYU-BhoSeg0X8lPmBxwx5kXVIM4nyM
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compassdock/DiffDock/utils/geometry.py |
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10687 |
compassdock/DiffDock/utils/gnina_utils.py |
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3499 |
compassdock/DiffDock/utils/inference_utils.py |
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compassdock/DiffDock/utils/molecules_utils.py |
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compassdock/DiffDock/utils/parsing.py |
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17248 |
compassdock/DiffDock/utils/precompute_series.py |
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compassdock/DiffDock/utils/print_device.py |
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compassdock/DiffDock/utils/sampling.py |
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14828 |
compassdock/DiffDock/utils/so3.py |
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compassdock/DiffDock/utils/torsion.py |
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compassdock/DiffDock/utils/torus.py |
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2538 |
compassdock/DiffDock/utils/training.py |
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compassdock/DiffDock/utils/utils.py |
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compassdock/DiffDock/utils/visualise.py |
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compassdock/posecheck/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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compassdock/posecheck/setup.py |
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compassdock/posecheck/posecheck/__init__.py |
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compassdock/posecheck/posecheck/docking_eval.py |
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compassdock/posecheck/posecheck/eval.py |
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compassdock/posecheck/posecheck/main.py |
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compassdock/posecheck/posecheck/posecheck.py |
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compassdock/posecheck/posecheck/data/__init__.py |
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compassdock/posecheck/posecheck/data/datasets.py |
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compassdock/posecheck/posecheck/utils/__init__.py |
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compassdock/posecheck/posecheck/utils/chem.py |
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compassdock/posecheck/posecheck/utils/clashes.py |
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compassdock/posecheck/posecheck/utils/constants.py |
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compassdock/posecheck/posecheck/utils/docking.py |
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compassdock/posecheck/posecheck/utils/docking_utils.py |
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compassdock/posecheck/posecheck/utils/interactions.py |
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compassdock/posecheck/posecheck/utils/loading.py |
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compassdock/posecheck/posecheck/utils/strain.py |
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compassdock/posecheck/posecheck/utils/validators.py |
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compassdock/posecheck/tests/__init__.py |
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compassdock/posecheck/tests/test_chem.py |
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compassdock/posecheck/tests/test_clashes.py |
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compassdock/posecheck/tests/test_interactions.py |
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compassdock/posecheck/tests/test_loading.py |
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compassdock/posecheck/tests/test_posecheck.py |
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compassdock/posecheck/tests/test_reduce.py |
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compassdock/posecheck/tests/test_strain.py |
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compassdock-0.1.4.dist-info/LICENSE |
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compassdock-0.1.4.dist-info/METADATA |
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compassdock-0.1.4.dist-info/WHEEL |
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compassdock-0.1.4.dist-info/top_level.txt |
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compassdock-0.1.4.dist-info/RECORD |
— |
— |