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cogent3

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2024.12.19a2 cogent3-2024.12.19a2-py3-none-any.whl

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Project: cogent3
Version: 2024.12.19a2
Filename: cogent3-2024.12.19a2-py3-none-any.whl
Download: [link]
Size: 771914
MD5: 6df0898a7faad241b5650216fcd610bb
SHA256: 17a6bc19f6b772b7c6f6145a07bdb7c7ab04ae9eb6619a65c071d69fda82f939
Uploaded: 2025-01-17 00:49:55 +0000

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METADATA · WHEEL · RECORD · entry_points.txt

METADATA

Metadata-Version: 2.3
Name: cogent3
Version: 2024.12.19a2
Summary: COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs.
Author-Email: Gavin Huttley <Gavin.Huttley[at]anu.edu.au>
Project-Url: Bug Tracker, https://github.com/cogent3/cogent3/issues
Project-Url: Changelog, https://github.com/cogent3/cogent3/blob/develop/changelog.md
Project-Url: Documentation, https://www.cogent3.org/
Project-Url: Source Code, https://github.com/cogent3/cogent3
Keywords: biology,genomics,statistics,phylogeny,evolution,bioinformatics
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
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[Description omitted; length: 9010 characters]

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cogent3-2024.12.19a2.dist-info/LICENSE sha256=2I0GcprqDVbk12mGPYMbwx8d1pGwBbwynEiAOsKAqsA 1462
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cogent3-2024.12.19a2.dist-info/RECORD — —

entry_points.txt

[cogent3.app]
align_to_ref = cogent3.app.align:align_to_ref
ancestral_states = cogent3.app.evo:ancestral_states
approx_jc69 = cogent3.app.dist:approx_jc69
approx_pdist = cogent3.app.dist:approx_pdist
bootstrap = cogent3.app.evo:bootstrap
cogent3_score = cogent3.app.align:cogent3_score
concat = cogent3.app.sample:concat
fast_slow_dist = cogent3.app.dist:fast_slow_dist
fixed_length = cogent3.app.sample:fixed_length
gap_dist = cogent3.app.dist:gap_dist
hypothesis = cogent3.app.evo:hypothesis
ic_score = cogent3.app.align:ic_score
jaccard_dist = cogent3.app.dist:jaccard_dist
load_aligned = cogent3.app.io:load_aligned
load_db = cogent3.app.io:load_db
load_json = cogent3.app.io:load_json
load_tabular = cogent3.app.io:load_tabular
load_unaligned = cogent3.app.io:load_unaligned
min_length = cogent3.app.sample:min_length
model = cogent3.app.evo:model
model_collection = cogent3.app.evo:model_collection
natsel_neutral = cogent3.app.evo:natsel_neutral
natsel_sitehet = cogent3.app.evo:natsel_sitehet
natsel_timehet = cogent3.app.evo:natsel_timehet
natsel_zhang = cogent3.app.evo:natsel_zhang
omit_bad_seqs = cogent3.app.sample:omit_bad_seqs
omit_degenerates = cogent3.app.sample:omit_degenerates
omit_duplicated = cogent3.app.sample:omit_duplicated
omit_gap_pos = cogent3.app.sample:omit_gap_pos
progressive_align = cogent3.app.align:progressive_align
quick_tree = cogent3.app.tree:quick_tree
scale_branches = cogent3.app.tree:scale_branches
select_translatable = cogent3.app.translate:select_translatable
smith_waterman = cogent3.app.align:smith_waterman
sp_score = cogent3.app.align:sp_score
tabulate_stats = cogent3.app.evo:tabulate_stats
take_codon_positions = cogent3.app.sample:take_codon_positions
take_n_seqs = cogent3.app.sample:take_n_seqs
take_named_seqs = cogent3.app.sample:take_named_seqs
translate_seqs = cogent3.app.translate:translate_seqs
trim_stop_codons = cogent3.app.sample:trim_stop_codons
uniformize_tree = cogent3.app.tree:uniformize_tree
write_db = cogent3.app.io:write_db
write_json = cogent3.app.io:write_json
write_seqs = cogent3.app.io:write_seqs
write_tabular = cogent3.app.io:write_tabular