cirrus-ngs

View on PyPIReverse Dependencies (0)

1.0.0a1 cirrus_ngs-1.0.0a1-py3-none-any.whl

Wheel Details

Project: cirrus-ngs
Version: 1.0.0a1
Filename: cirrus_ngs-1.0.0a1-py3-none-any.whl
Download: [link]
Size: 110197
MD5: 2c31b4826573d7f8267eaff85acff058
SHA256: ed64f282cee081ea1786a87328a64df645db018bcb831c00a4c0912a7f545ae6
Uploaded: 2018-05-25 12:00:12 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: cirrus-ngs
Version: 1.0.0a1
Summary: Cloud-optimized primary analysis pipelines for RNA-seq, miRNA-seq, ChIP-seq, and variant calling in whole-genome/whole-exome DNA-seq
Author: Mustafa Guler
Author-Email: mguler[at]ucsd.edu
Maintainer: Mustafa Guler
Maintainer-Email: mguler[at]ucsd.edu
Home-Page: https://github.com/ucsd-ccbb/cirrus-ngs
License: MIT
Keywords: bioinformatics,NGS,jupyter
Classifier: License :: OSI Approved :: MIT License
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3.6
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.5
Requires-Dist: paramiko
Requires-Dist: pyyaml
Requires-Dist: jupyter
Requires-Dist: notebook
Requires-Dist: scp
Requires-Dist: cfncluster
Description-Content-Type: text/markdown
[Description omitted; length: 18374 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.31.1)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
cirrus_ngs-1.0.0a1.dist-info/METADATA sha256=M2MFL6G-_UrR3ZxNXQ7XjMtZyNe19g1q9tZmZo2rjFY 19366
cirrus_ngs-1.0.0a1.dist-info/RECORD
cirrus_ngs-1.0.0a1.dist-info/WHEEL sha256=NzFAKnL7g-U64xnS1s5e3mJnxKpOTeOtlXdFwS9yNXI 92
cirrus_ngs-1.0.0a1.dist-info/entry_points.txt sha256=BeGpqtuNxNttzeNS5DlPY6DllsqnW7RCH2_FvPdGW6Q 51
cirrus_ngs-1.0.0a1.dist-info/top_level.txt sha256=38yvuVuSvEChTrOC7L6ASaIaVxKhaeuK-KDeRadJ0HM 10
cirrusngs/__init__.py sha256=rPkrnQdc5XfJzkkGAJzngdAFHSf9nx_BNG_PwxkX28s 68
cirrusngs/cirrus.yaml sha256=bd33G7FlJJuDEHS3YyTa4diiGD4ug3kxJhctWHFiDvw 266
cirrusngs/cirrusngs.py sha256=5XoKPmf1D4XG4KjltagntG38cbY5U-0VYy-bsxgj0Fs 5407
cirrusngs/cli.py sha256=DNEuUy39knFpvraAiYdujcREc8VNP7s3CFcJTjv0v98 3829
cirrusngs/design_files/ChIPSeq_design_example.txt sha256=O66B9ixASLVy1Qi8qkU6Px04FUg1eZgjVuK4Qn8Icxc 279
cirrusngs/design_files/DNASeq_design_example.txt sha256=hlndowzqO8V3zsgyIf-D17hWAV0nGw5ryNGVZ6Uy5pY 451
cirrusngs/design_files/RNASeq_design_example.txt sha256=BKnKZsLjD-kpWXb6QvGrel0RklHyLMly6NMZXKzGtOU 130
cirrusngs/design_files/WES_design_example.txt sha256=lA0UMoH6GI_OGf4UoSLPKlNTeckfdSa34LyLloiGaE4 450
cirrusngs/design_files/WGS_design_example.txt sha256=kaJomN3IxUG-VkfgbfwPDqMMIAxjQvDqvebUR1hQfaA 449
cirrusngs/design_files/miRNASeq_design_example.txt sha256=LYWPNfOo3RQvj5UBY85e2haALsOY2os6IRiqZTUfNv4 207
cirrusngs/managers/AddonsManager.py sha256=bi9pDniZRc9SXIQqqfkqyz2n7RP2sdUsWhsCfHc-820 14457
cirrusngs/managers/CFNClusterManager.py sha256=Tm4Lo7p8pknTukE3do6aXSNzwbLtJ7pVeuzZB3SWJ1Q 17683
cirrusngs/managers/ConnectionManager.py sha256=UzUcxJ9qg5CxMX3noTn__A5UUEDtx___YH57WB37zOc 4095
cirrusngs/managers/PipelineManager.py sha256=t0Fvp3bUa_ygTAA7gHCcVRhEidD21DpsOvMxnHApaMc 3897
cirrusngs/managers/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cirrusngs/notebooks/BasicCFNClusterSetup.ipynb sha256=ZXrRPuYLRAvISOkkCxs0NCAksRPXdcG5snCQPytOm7c 7481
cirrusngs/notebooks/ChIPSeqTemplate.ipynb sha256=Z8rHfXV4PjtU9B4wvPLAaUv5vHIg-Eo9MOND5pD_Frs 8005
cirrusngs/notebooks/DNASeqTemplate.ipynb sha256=sE57bTpwCSj4n55jzLdSIkyrXq9GCdzAK75eVG0poC4 8361
cirrusngs/notebooks/RNASeqTemplate.ipynb sha256=U-LHmaIzQxY-F6lczzYBlwy3Lxy1IK_eX9ceEF-RH4M 8294
cirrusngs/notebooks/WESTemplate.ipynb sha256=sE57bTpwCSj4n55jzLdSIkyrXq9GCdzAK75eVG0poC4 8361
cirrusngs/notebooks/WGSTemplate.ipynb sha256=sE57bTpwCSj4n55jzLdSIkyrXq9GCdzAK75eVG0poC4 8361
cirrusngs/notebooks/miRNASeqTemplate.ipynb sha256=qNF2yBHGW5lpMr-iIrleW9LLXW4j8Z0cXU1vaUX0sIk 7504
cirrusngs/notebooks/.ipynb_checkpoints/BasicCFNClusterSetup-checkpoint.ipynb sha256=ZXrRPuYLRAvISOkkCxs0NCAksRPXdcG5snCQPytOm7c 7481
cirrusngs/notebooks/.ipynb_checkpoints/ChIPSeqPipeline-checkpoint.ipynb sha256=VxhUnzcF-Dmk0Hz6M5szzol9nx4FKJ9e8LWwT9H2DuU 8414
cirrusngs/notebooks/.ipynb_checkpoints/ChIPSeqTemplate-checkpoint.ipynb sha256=Z8rHfXV4PjtU9B4wvPLAaUv5vHIg-Eo9MOND5pD_Frs 8005
cirrusngs/notebooks/.ipynb_checkpoints/CheckScripts-checkpoint.ipynb sha256=G0NecaQw5YCWKcaX3vtJCRMTwPaTt5MzEv5OdfIBprA 8275
cirrusngs/notebooks/.ipynb_checkpoints/ChiPSeq Pipeline-checkpoint.ipynb sha256=9cEqsbPyoaPkyRLnx5ZlrqJr0G4UX00SqC8Xm28gUss 11371
cirrusngs/notebooks/.ipynb_checkpoints/ChiPSeqPipeline-checkpoint.ipynb sha256=_ZhnuC2Cnm5FKg2WcMq3j3J70CKjfkeQ-rtIyw1c0Pg 8574
cirrusngs/notebooks/.ipynb_checkpoints/DNASeqTemplate-checkpoint.ipynb sha256=sE57bTpwCSj4n55jzLdSIkyrXq9GCdzAK75eVG0poC4 8361
cirrusngs/notebooks/.ipynb_checkpoints/RNASeq Pipeline-checkpoint.ipynb sha256=ZAhAfLLFYdKgttSfmoHxLV0mzUavyR3SICVyctNt3mc 10158
cirrusngs/notebooks/.ipynb_checkpoints/RNASeqTemplate-checkpoint.ipynb sha256=U-LHmaIzQxY-F6lczzYBlwy3Lxy1IK_eX9ceEF-RH4M 8294
cirrusngs/notebooks/.ipynb_checkpoints/RNA_Pipeline-checkpoint.ipynb sha256=DiUv0w4mOBf0wJ5MdYofpqMs8Ff41I4hSctwQu88E_A 10946
cirrusngs/notebooks/.ipynb_checkpoints/miRNASeqTemplate-checkpoint.ipynb sha256=qNF2yBHGW5lpMr-iIrleW9LLXW4j8Z0cXU1vaUX0sIk 7504
cirrusngs/notebooks/deprecated/BasicCFNClusterSetup.ipynb sha256=5jumcSRi5ZxJu13x-0mwPtTG7uWFsYLp3rn2CSZpESI 7963
cirrusngs/notebooks/deprecated/ChIPSeqPipeline.ipynb sha256=VxhUnzcF-Dmk0Hz6M5szzol9nx4FKJ9e8LWwT9H2DuU 8414
cirrusngs/notebooks/deprecated/CheckScripts.ipynb sha256=G0NecaQw5YCWKcaX3vtJCRMTwPaTt5MzEv5OdfIBprA 8275
cirrusngs/notebooks/deprecated/CirrusAddons.ipynb sha256=yzncRHnHrFRml06Au8zdM8gPKQ8Gpv8qGFCo8-tHKPA 41330
cirrusngs/notebooks/deprecated/RNASeq Pipeline.ipynb sha256=ZAhAfLLFYdKgttSfmoHxLV0mzUavyR3SICVyctNt3mc 10158
cirrusngs/notebooks/deprecated/RNASeqTemplate.ipynb sha256=VMDh4yHW8426gD9ksC1fa7qBMYzyL4B_FpsCHedy8pM 11095
cirrusngs/notebooks/deprecated/WES|WGS Pipeline.ipynb sha256=54sjz4EfG1hVwQUY2VyrCfOBgDUb9tDJnznxSi5gOdo 10016
cirrusngs/notebooks/deprecated/WES|WGSPipeline.ipynb sha256=2ufcBg-i6LntyRLqk9ZW2CsALSbkL7pIO5SgeYKJIPk 10864
cirrusngs/notebooks/deprecated/miRNA-Seq Pipeline.ipynb sha256=ZqdlbqZIQH-duI_Xt4CZeO50ev49T1_0n7_OzvrIrhI 9453
cirrusngs/notebooks/deprecated/miRNAPipeline.ipynb sha256=KAe5Fp2UO4F5c7d_Nz4uR_0L887pJvXwmqGjMlrYlqs 10929
cirrusngs/notebooks/deprecated/.ipynb_checkpoints/RNASeqTemplate-checkpoint.ipynb sha256=VMDh4yHW8426gD9ksC1fa7qBMYzyL4B_FpsCHedy8pM 11095
cirrusngs/util/DesignFileLoader.py sha256=KYUovu7gNJF0HmIT1lzgCMYloy2vkDYF9HAD-eVZ4ho 2619
cirrusngs/util/QstatParser.py sha256=YHRDTHNBQ42nd0rVlmBfnfAZw5MlnHaniL54a_BuhPY 6802
cirrusngs/util/YamlFileMaker.py sha256=3vXtoKNYIUTHE4VxtAIBdxsmXYcHvcfBqSW57Gi3czg 3342
cirrusngs/util/__init__.py sha256=uAjSw4h73lhLWGq0wgbcRd4tFquX1QNXgJWixMg4s2g 41

top_level.txt

cirrusngs

entry_points.txt

cirrus-ngs = cirrusngs.cli:main