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1.3.0 circtools-1.3.0-py3-none-any.whl

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Project: circtools
Version: 1.3.0
Filename: circtools-1.3.0-py3-none-any.whl
Download: [link]
Size: 1099640
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Uploaded: 2023-05-24 00:08:49 +0000

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METADATA

Metadata-Version: 2.1
Name: circtools
Version: 1.3.0
Summary: circtools - a circular RNA toolbox
Author: Tobias Jakobi
Author-Email: tjakobi[at]arizona.edu
Home-Page: https://github.com/jakobilab/circtools
Project-Url: Bug Reports, https://github.com/jakobilab/circtools/issues
Project-Url: Jakobi Lab, https://jakobilab.org
Project-Url: Source, https://github.com/jakobilab/circtools
Project-Url: Documentation, https://docs.circ.tools
License: GNU General Public License (GPL)
Keywords: circRNA,circular RNA bioinformatics
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Requires-Python: >=3.7
Requires-Dist: pysam (>=0.16.0.1)
Requires-Dist: pybedtools (>=0.7.10)
Requires-Dist: biopython (>=1.71)
Requires-Dist: scipy (>=0.19.0)
Requires-Dist: reportlab (>=3.3.0)
Requires-Dist: pandas (>=0.25.0)
Requires-Dist: statsmodels
Requires-Dist: numpy (>=1.14.5)
Requires-Dist: HTSeq (>=2.0.0)
Requires-Dist: pathos (>=0.3.0)
Description-Content-Type: text/x-rst
[Description omitted; length: 8830 characters]

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circtools

entry_points.txt

circtools = circtools.circtools:main
circtools_circtest_wrapper = circtools.scripts.r_runner:circtools_circtest_wrapper
circtools_enrich_visualization = circtools.scripts.r_runner:circtools_enrich_visualization
circtools_exon_wrapper = circtools.scripts.r_runner:circtools_exon_wrapper
circtools_install_R_dependencies = circtools.scripts.r_runner:install_R_dependencies
circtools_primex_formatter = circtools.scripts.r_runner:circtools_primex_formatter
circtools_primex_wrapper = circtools.scripts.r_runner:circtools_primex_wrapper
circtools_quickcheck_wrapper = circtools.scripts.r_runner:circtools_quickcheck_wrapper
circtools_reconstruct_coverage_graph = circtools.scripts.r_runner:circtools_reconstruct_coverage_graph
circtools_reconstruct_summarized_coverage_profiles = circtools.scripts.r_runner:circtools_reconstruct_summarized_coverage_profiles
circtools_reconstruct_visualization = circtools.scripts.r_runner:circtools_reconstruct_visualization
circtools_sirna_formatter = circtools.scripts.r_runner:circtools_sirna_formatter
create_igv_script = circtools.scripts.create_igv_script:main
create_igv_script_from_gene_names = circtools.scripts.create_igv_script_from_gene_names:main
create_igv_script_from_position_list = circtools.scripts.create_igv_script_from_position_list:main
detect_new_exons_from_fuchs_data = circtools.scripts.detect_new_exons_from_fuchs_data:main
guided_denovo_circle_structure = circtools.reconstruct.guided_denovo_circle_structure_parallel:main
wonderdump = circtools.scripts.bash_runner:wonderdump