Path |
Digest |
Size |
cg/__init__.py |
sha256=zL4ylew_Y1DYkHsxPMZrXejqhgOd83aJ2b3SFtnrFVM
|
41 |
cg/apps/__init__.py |
sha256=pYf0vxo4iYQqURzFRYzqpOCdV8Cm9MWx0GHvJOz0EMg
|
315 |
cg/apps/coverage/__init__.py |
sha256=dJtsmNf8tODE2-VEomMIoYA7ugLYZAk_upsfOQCZeF8
|
27 |
cg/apps/coverage/api.py |
sha256=e_ozC3QeNKoEfpjjMaL-XjeBLtz-JySWccrtw0E9mLM
|
2940 |
cg/apps/crunchy/__init__.py |
sha256=wqpS8FrCNUnMTeaVxhw0Plq7gv0DGTVojGIyJlEUPeU
|
56 |
cg/apps/crunchy/crunchy.py |
sha256=cUM_qCvi6rbIEuf6QtSLUO09yT9-NVmTA-t9l9uGY2w
|
12696 |
cg/apps/crunchy/files.py |
sha256=ojRzyEE2EhNg0TMfxduvZU6gL9fasef8m61J0GegMUo
|
4502 |
cg/apps/crunchy/models.py |
sha256=MOSMFmZ3u1ShUAIy2t229VUsE-5RCo1Z3ZBCZWIdAgM
|
430 |
cg/apps/crunchy/sbatch.py |
sha256=6TLFsj6ARPA4M8TTBYONqHmIk6RygsGvLDdPETMJwNc
|
910 |
cg/apps/demultiplex/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
cg/apps/demultiplex/demultiplex_api.py |
sha256=pDeFbohhi_f1h824sAGS9pnSn7pc2vErg7ayct-EDGY
|
12277 |
cg/apps/demultiplex/sample_sheet/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
cg/apps/demultiplex/sample_sheet/api.py |
sha256=ygM-Sc5ekFgHVSECDxHl7lOEuPkCMWDGn5sfzeGUwo0
|
13118 |
cg/apps/demultiplex/sample_sheet/index.py |
sha256=7bx8CZe2A1Hd1YL9JrWkNwRGylVYCJGdVcwKDC1VWCI
|
2183 |
cg/apps/demultiplex/sample_sheet/override_cycles_validator.py |
sha256=6KliZ--0cjDJWQ3itBpiD28CpA9Z74E08deIVxOWpa4
|
7341 |
cg/apps/demultiplex/sample_sheet/read_sample_sheet.py |
sha256=JI4aQJhiDumB1XeBQ04SbONQibQfobu28O4-XVvf6pc
|
3343 |
cg/apps/demultiplex/sample_sheet/sample_models.py |
sha256=aymFExVkQ2BLtX5j-SGJhxTHz_9iKCVqlcVFV7h1fdk
|
6991 |
cg/apps/demultiplex/sample_sheet/sample_sheet_creator.py |
sha256=b8AXr4UmjPTSHNFKc9vEoFO4TDMhLjfdXtDccvd4nW4
|
6177 |
cg/apps/demultiplex/sample_sheet/sample_sheet_models.py |
sha256=oaOGgzMfczKuLvXoIQimIee13PWEwEaDu3LFJ7MwQsE
|
1432 |
cg/apps/demultiplex/sample_sheet/sample_sheet_validator.py |
sha256=aNo10ccvKe4Hdge1ueEuECPzEPrAMP672X76Ljn1NOk
|
8358 |
cg/apps/demultiplex/sample_sheet/utils.py |
sha256=-FH8hLCHyEjOKIeTvrBpZzy5N4Il8sLw0WbdyOISo68
|
1988 |
cg/apps/demultiplex/sample_sheet/validators.py |
sha256=SF4Ys-lVCe9Gtbt5P9fEL-hbesLsIF7Lh1Fk-hkzsrM
|
824 |
cg/apps/demultiplex/sbatch.py |
sha256=x7psttZ7PB8lYY6gAvj51cfe-d57weAUTOCjr88usv8
|
677 |
cg/apps/downsample/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
cg/apps/downsample/downsample.py |
sha256=_r6vOigSZa00LxS5UcworYggrLnv1NWjQJzMu3nAPJk
|
6340 |
cg/apps/downsample/utils.py |
sha256=zgp14Z4mfg1g1XxqEUF2sfnFUrmPuOqVEJBwmX_HVSc
|
2125 |
cg/apps/environ.py |
sha256=TKJb36n3swrKRsaBOilKobRp9eFfZZBZfiD3z7YYBcU
|
298 |
cg/apps/gens.py |
sha256=kVm-PtyGeS7CkvzW1_29FuEWZ_uEji10BxjfC9GsS-0
|
1888 |
cg/apps/gt.py |
sha256=h6qSHMKrVHoi46J-Uq8NbN46U7YfpPFEowCrzRd4spU
|
3419 |
cg/apps/hermes/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
cg/apps/hermes/hermes_api.py |
sha256=CEes3Iq10siYMddcpXGy7kRONWkzQAJUFTcz-FxCL_E
|
3059 |
cg/apps/hermes/models.py |
sha256=sbutAX_bNCbh-hLwnpjqV01rq3AdbJel-NcGOBiCJAw
|
1298 |
cg/apps/housekeeper/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
cg/apps/housekeeper/hk.py |
sha256=L4T0DD10aEu1gTErqZqOOXMfWKdoBADXSXebh67ZaIo
|
30107 |
cg/apps/housekeeper/models.py |
sha256=rmR_8QHESsWkn5hbqnRtAtVje_M7YK33YkdG781KIY0
|
326 |
cg/apps/invoice/__init__.py |
sha256=1YWal0E1HPO5sdLOj9_JUwL_17Z2DSj7iJV5kEd8Q-4
|
32 |
cg/apps/invoice/render.py |
sha256=2U93Sdak_8v0j56qZLdcvBeofWO0ppiUqKNAaaCLCsU
|
4970 |
cg/apps/invoice/templates/KI_pool_invoice.xlsx |
sha256=gPm95lrNkdrwlA7tQ3dIJQAQsZBiqc1Ttacjmuu9oBU
|
113533 |
cg/apps/invoice/templates/KI_sample_invoice.xlsx |
sha256=eyOnkyIiEaeW7yXBpI9mUAaR9NvTeFYHeGZMgRkXUsg
|
75147 |
cg/apps/invoice/templates/KTH_pool_invoice.xlsx |
sha256=sZDt80Y3dzkOAj5M9sUONRQ4OzNY-nZYtebWquMMi1Y
|
113053 |
cg/apps/invoice/templates/KTH_sample_invoice.xlsx |
sha256=B4D-Nb0bcHhl71SZypXY5CtNfUPS2Mn3TSsCVvlu7i0
|
75008 |
cg/apps/lims/__init__.py |
sha256=7j5PAibFkYnUTO9Cvvv8IMy_Fg-i88N7VqOs_eAduhE
|
25 |
cg/apps/lims/api.py |
sha256=lKfY2gmORrKzjkcs0jrU7Mlv32wVUXW392yuJxK3ne8
|
23231 |
cg/apps/lims/batch.py |
sha256=7T6shTaQukT8f3ZZgOk0DXj9KO3sb4FicWBulqARuqM
|
2652 |
cg/apps/lims/order.py |
sha256=wAVmAHWJRGX8uXLK-enfphuT34nekw0OtRd5SvpRRAo
|
8129 |
cg/apps/lims/sample_sheet.py |
sha256=037nYVHtDzRPtvmbXAJK1zP1YjCcPOIE-2OEKJorX78
|
3154 |
cg/apps/loqus.py |
sha256=TyLQaU5kT7KdLwyWo9koc_HXO0RwxaBQEwKFs3Nn_KI
|
4866 |
cg/apps/madeline/__init__.py |
sha256=0vEgTYFvpWxfqaU1Fl8oJONqIxzi7eqnMVApkgFo0Fk
|
35 |
cg/apps/madeline/api.py |
sha256=PyjOX0wLk7pZWCUajpsA844wqCOw0fQfTEyNp_innS0
|
3213 |
cg/apps/mip/__init__.py |
sha256=l3TyXnP7G_lS_NVR828bCgR2McKUzyXBFoaPCy_Yl44
|
23 |
cg/apps/mip/confighandler.py |
sha256=V6eljnzbekQ4M98P8npVI8McPvbIN6z7DRo19Yo2c4Q
|
3564 |
cg/apps/mutacc_auto.py |
sha256=KRQRXP5yI_LTaBFnjLCXAGrhiAUna9eOPAHhiKbhDfk
|
2207 |
cg/apps/orderform/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
cg/apps/orderform/excel_orderform_parser.py |
sha256=zMKGMhX3XWG5RQ54iVkhLCCiG5J_tN5qasxD_Fv-Z8s
|
9909 |
cg/apps/orderform/json_orderform_parser.py |
sha256=mDu1RPjEr3CHYIqGrzOZSBx6fa5-l0nz8EfezTJ54kk
|
3081 |
cg/apps/orderform/orderform_parser.py |
sha256=HD3rKLdBYfwSfqp-hNR54ONLO_yD1PcoMxcB7kMhhSM
|
6550 |
cg/apps/orderform/utils.py |
sha256=PMAMNJN62nf8-UwTFjzGjIiUk7RFD0qDPGOFzxOsfCg
|
502 |
cg/apps/osticket.py |
sha256=baODuUEzIiSzZoO_HGD8QMTMOSXHmjM0ESX881FQIpM
|
2537 |
cg/apps/scout/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
cg/apps/scout/scout_export.py |
sha256=7OZmPDqwsGMNb9O27_flLhMdrvVsHoeKmYskhHdhDdo
|
3248 |
cg/apps/scout/scoutapi.py |
sha256=9OAjErVF5a5CrT2UVlWs6tlVeYjoAdq8BFWzhKhkxwE
|
14403 |
cg/apps/scout/validators.py |
sha256=GoRbUe896sDs9SO3rhlCOxZEA58rZWxE_QaC7jXUilE
|
444 |
cg/apps/slurm/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
cg/apps/slurm/sbatch.py |
sha256=UCbUo6TipX7uVECttTDiokRiNq_qPPOdUSHQGQrIwhQ
|
1277 |
cg/apps/slurm/slurm_api.py |
sha256=mAUF7uyTBc-36-tOe3iZXuDNXaghwbMoMZw2KXlwVb0
|
3559 |
cg/apps/tb/__init__.py |
sha256=qHZbz8gBX_o2KU3DLHccCN2CuedR6_IJlELAnv9oEBs
|
32 |
cg/apps/tb/api.py |
sha256=m8IVoSix-jxJxJk79zrGWqFbl4RR5u-m0A2GO_R4vGc
|
8649 |
cg/apps/tb/dto/create_job_request.py |
sha256=ZTL491KYxBQu_nXxcl6hpuSsbM9mufjmWtE62_0RAL8
|
152 |
cg/apps/tb/dto/summary_response.py |
sha256=jwE1Pz0WAuKrytYdKX_VNLA_THEuKLr_JLb3CDwJA0g
|
929 |
cg/apps/tb/models.py |
sha256=I88cKRuBns3dD2eFmPccRrk1eSQysbi9u3UYTWLjnOw
|
1305 |
cg/apps/tb/validators.py |
sha256=E_7_grCEf7lTOj37XKwYl1y1h0Zj__FohJNeV5nGgt0
|
305 |
cg/cli/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
cg/cli/add.py |
sha256=aNEeMhPCp9xxYVWHdYo6WpPTU4YK-zDE0Zt3hI22bJk
|
11960 |
cg/cli/archive.py |
sha256=0P1KCMDHSHQIm-z3ONkF7JkmHvx0cziUJodYG-Z-pN8
|
4411 |
cg/cli/backup.py |
sha256=TBLF3yLstEI_bcrGoCo79CcClBqa2-Lk-54rofmo57I
|
11229 |
cg/cli/base.py |
sha256=YRvuMXrBSdU4elOx81UzNVe7AtApmpmg2xsVX3PHVQQ
|
4138 |
cg/cli/clean.py |
sha256=WTkyzaUFRDP2VP9_UTGBrV6aqvIYZHF6c1KBPQp--38
|
10822 |
cg/cli/compress/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
cg/cli/compress/base.py |
sha256=GSBDojXXz4yn6LzXj3RvmosIg3z1bjcPsv3r2ubQpWU
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2344 |
cg/cli/compress/fastq.py |
sha256=593i-fccJerscuXiAYQXWDZEQy7zeMhzRzigDtrfobs
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6724 |
cg/cli/compress/helpers.py |
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8168 |
cg/cli/delete/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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0 |
cg/cli/delete/base.py |
sha256=czdzYFjhunonn0Xi5TXbcKsCfjZWBhpXvaU2JoDpSbo
|
775 |
cg/cli/delete/case.py |
sha256=R12mkYaZbyLoBXnc-Yz4XrFz8iFKtyCtmJnEmwcofj0
|
4815 |
cg/cli/delete/cases.py |
sha256=yJRdNna2MsvIcl3fAbs8tDfFs7PDEL_b9FCYdVW5RiQ
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1911 |
cg/cli/delete/illumina_sequencing_run.py |
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741 |
cg/cli/delete/observations.py |
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2785 |
cg/cli/deliver/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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cg/cli/deliver/base.py |
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6766 |
cg/cli/deliver/utils.py |
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1417 |
cg/cli/demultiplex/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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cg/cli/demultiplex/base.py |
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962 |
cg/cli/demultiplex/copy_novaseqx_demultiplex_data.py |
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9370 |
cg/cli/demultiplex/demux.py |
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8456 |
cg/cli/demultiplex/finish.py |
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cg/cli/demultiplex/sample_sheet.py |
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3173 |
cg/cli/downsample.py |
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3483 |
cg/cli/generate/__init__.py |
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cg/cli/generate/base.py |
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cg/cli/generate/delivery_report/__init__.py |
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cg/cli/generate/delivery_report/base.py |
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cg/cli/generate/delivery_report/options.py |
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cg/cli/generate/delivery_report/utils.py |
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5973 |
cg/cli/get.py |
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8852 |
cg/cli/post_process/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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cg/cli/post_process/post_process.py |
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2367 |
cg/cli/post_process/utils.py |
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3097 |
cg/cli/sequencing_qc/sequencing_qc.py |
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427 |
cg/cli/set/__init__.py |
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cg/cli/set/base.py |
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cg/cli/set/case.py |
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cg/cli/set/cases.py |
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cg/cli/store/__init__.py |
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cg/cli/store/base.py |
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cg/cli/store/store.py |
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6203 |
cg/cli/transfer.py |
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1864 |
cg/cli/upload/__init__.py |
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cg/cli/upload/base.py |
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cg/cli/upload/coverage.py |
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cg/cli/upload/delivery_report.py |
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1533 |
cg/cli/upload/fohm.py |
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cg/cli/upload/genotype.py |
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1481 |
cg/cli/upload/gens.py |
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1929 |
cg/cli/upload/gisaid.py |
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cg/cli/upload/mutacc.py |
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2631 |
cg/cli/upload/nipt/__init__.py |
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cg/cli/upload/nipt/base.py |
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cg/cli/upload/nipt/ftp.py |
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2284 |
cg/cli/upload/nipt/statina.py |
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cg/cli/upload/observations/__init__.py |
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cg/cli/upload/observations/observations.py |
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cg/cli/upload/observations/utils.py |
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cg/cli/upload/scout.py |
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12675 |
cg/cli/upload/utils.py |
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cg/cli/upload/validate.py |
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cg/cli/utils.py |
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cg/cli/workflow/__init__.py |
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cg/cli/workflow/balsamic/__init__.py |
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— |
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