cellotype

View on PyPIReverse Dependencies (0)

0.1 cellotype-0.1-py3-none-any.whl

Wheel Details

Project: cellotype
Version: 0.1
Filename: cellotype-0.1-py3-none-any.whl
Download: [link]
Size: 117889
MD5: 06c11effd5dee873bb24a4cc1cad8014
SHA256: 533fafb905cd374fcd923a61b8fffa3a7582043b9e3dd7aedba4434eb3b577e2
Uploaded: 2024-09-17 22:56:19 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: cellotype
Version: 0.1
Summary: An end-to-end Transformer-based method for automated cell/nucleus segmentation and cell type classification
Author: Minxing Pang
Author-Email: minxing[at]sas.upenn.edu
Home-Page: https://github.com/maxpmx/CelloType
License: Apache License 2.0
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.8
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Image Processing
Classifier: Topic :: Scientific/Engineering :: Image Recognition
Classifier: Topic :: Software Development :: Libraries
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Requires-Python: ==3.8.*
Requires-Dist: cython
Requires-Dist: scipy
Requires-Dist: shapely
Requires-Dist: timm
Requires-Dist: h5py
Requires-Dist: submitit
Requires-Dist: scikit-image
Requires-Dist: opencv-python
Requires-Dist: pycocotools
Requires-Dist: gdown
Requires-Dist: sahi
Requires-Dist: torch (==1.9.0)
Requires-Dist: torchvision (==0.10.0)
Requires-Dist: cudatoolkit (==11.1)
License-File: LICENSE
[No description]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.38.4)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
cellotype/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cellotype/dataset.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cellotype/evaluate.py sha256=SyKACfUB4ykRYstOlBqvlpaBmbrZlcgLo7yE5Zacjsg 6072
cellotype/predict.py sha256=mKFLlIdboGawOhe7Z1ktluchK4z5ybDdykgZ4jOkHsM 10855
cellotype/trainer.py sha256=zNQrEyQfEFypQ60Q1v1mSZoUyy4U6r985tvLPzt0TKE 26862
cellotype/visualize.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cellotype/maskdino/__init__.py sha256=cdeB6YhYagmZdM1eZqI4KMk-VCDrEdRYTmiwau6A__0 1363
cellotype/maskdino/config.py sha256=CGLOdrHfLS15X7hu0xr_1YJlVHSYO57CNjpKJ1bSKxQ 5894
cellotype/maskdino/maskdino.py sha256=XcLWjGxWpgGnvtlLNwJdBwbg7NqRTYE6T8Ks6VZKFV4 24071
cellotype/maskdino/test_time_augmentation.py sha256=O_0PVdIeS1tG1rOUXSVQcexVYK8R36Lkpo_mVU2GIDQ 3885
cellotype/maskdino/data/__init__.py sha256=6VByLvR_WFBK1KeHuvexD5CDkXStvokSgcqyde7CU8A 26
cellotype/maskdino/data/dataset_mappers/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cellotype/maskdino/data/dataset_mappers/coco_instance_new_baseline_dataset_mapper.py sha256=e36edPWCNUPbckZ7WcUiEf60K73NsmVkeb7fdmxuYTg 7519
cellotype/maskdino/data/dataset_mappers/coco_panoptic_new_baseline_dataset_mapper.py sha256=PdkGo_NCtuVV5_hK36oqAdvAW0uEsehV0TxyXlT_6Iw 6178
cellotype/maskdino/data/dataset_mappers/codex_mapper.py sha256=sd98JJ4EX4E1bydTYlHlIZt9Cru_uBKQwuk5LEAAGSA 7735
cellotype/maskdino/data/dataset_mappers/detr_dataset_mapper.py sha256=B8ZYV5vdrE0oCG-nO_1yWd8HOveNllIECR3rdZcHGG8 5576
cellotype/maskdino/data/dataset_mappers/mask_former_semantic_dataset_mapper.py sha256=CeeTSCPzJTeZsJ0qLIaOMO7gxR4xy0FLR5qqlT_-Vhk 7193
cellotype/maskdino/data/datasets/__init__.py sha256=OerjBOhFgcuBkhIQ95vsdCPCXN-ZdC7VC-i_yQNYRx8 306
cellotype/maskdino/data/datasets/register_ade20k_full.py sha256=feMgE9-ApLXUTvfOLmlZaRd3CAxIJrDleQuKh8wGZ1I 53179
cellotype/maskdino/data/datasets/register_ade20k_instance.py sha256=u1VE_SRpNnXwBedJxPnUKgew6q1g_N-KiL5xxIX8vnw 4835
cellotype/maskdino/data/datasets/register_ade20k_panoptic.py sha256=l2I41nuwBspI3rTrzVNof8c2VzINbXr44h4crdPnEt0 20140
cellotype/maskdino/data/datasets/register_coco_panoptic_annos_semseg.py sha256=z482xd7cFxtMH7apIP6G4vVyJk26xVrboFB5mn8vWBo 7604
cellotype/maskdino/data/datasets/register_coco_stuff_10k.py sha256=Mlp6-a0UzRbs-PraHZTNgn44h9zD326pdyO2KDPSdMk 13783
cellotype/maskdino/data/datasets/register_mapillary_vistas.py sha256=HeptPOINOc_GJPO-B1NWke8JFnQpSQUWbCc7Y3DDuCM 13525
cellotype/maskdino/data/datasets/register_mapillary_vistas_panoptic.py sha256=pU_u08s_5MMHBTCpGf8rQdIcsigpsF5GuaHzmW_02GM 16878
cellotype/maskdino/evaluation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cellotype/maskdino/evaluation/instance_evaluation.py sha256=XyOXitVricTdCqVuTieRKOWv6zqol3jbu0eK2eSqHc0 4732
cellotype/maskdino/modeling/__init__.py sha256=OxzNyUhj8dg1bYKg8su1TjEK8h4CmZBfG5rcrnW9xCA 208
cellotype/maskdino/modeling/criterion.py sha256=W6aWelXat4wlVkfYgsWXDrnEZ23jkgsKXSjCLvt6-gs 20036
cellotype/maskdino/modeling/matcher.py sha256=TIw6FOP07QX_n8_CROnb0xgPhJAJ8sb1sMPRcEpCpkA 10044
cellotype/maskdino/modeling/backbone/__init__.py sha256=vce-6h2kwmh8JgEi8LrbY1OCupAr4nkhDej9d1ypgzY 52
cellotype/maskdino/modeling/backbone/focal.py sha256=FoK_pm-_p6u73j60FNnhrFIMBDMm58_dv1CgBWcUkxE 26220
cellotype/maskdino/modeling/backbone/swin.py sha256=1HptCIPbXKPa66eWBUycZq2fNXSVKgcWPyqYeEh807k 28337
cellotype/maskdino/modeling/meta_arch/__init__.py sha256=1yRHC2xY3tzhMJJLgPH72at0sUMSRta-rAtLmqWunp0 50
cellotype/maskdino/modeling/meta_arch/maskdino_head.py sha256=W2uVZ7o5uyI83FbZhIkG7layV5sFcx8ga7GAoSsIcEw 3387
cellotype/maskdino/modeling/pixel_decoder/__init__.py sha256=ZlUKENYAmULknTAvtSP7fHkQX_JfOTAQgw4vuLywovc 48
cellotype/maskdino/modeling/pixel_decoder/maskdino_encoder.py sha256=H_zt1KqUT0QnFPUOK7rNCMMyO6bAFt1p7S-C88vARnw 19350
cellotype/maskdino/modeling/pixel_decoder/position_encoding.py sha256=MdUeui9Xw6JSj3EGGT4WFW6_xDY4IJJCpZTt_rWpdLM 2790
cellotype/maskdino/modeling/transformer_decoder/__init__.py sha256=oX0Alu3msf7aPlzFOUI8Vpbm7sWWXfUr9FxOrqMzcHo 97
cellotype/maskdino/modeling/transformer_decoder/dino_decoder.py sha256=az_0D-94cG754LN9CCgMiQdMxw3lRGqqTsgUHgYsIug 11133
cellotype/maskdino/modeling/transformer_decoder/maskdino_decoder.py sha256=bgWoQTaStkZ7o_JCMNl-ADocvwSqSJNfh9oe5-DUXlo 26128
cellotype/maskdino/utils/__init__.py sha256=9tKMtfCKQmqzjbH7AVWxWIwoyEC8t-XF_8K54twA-CY 65
cellotype/maskdino/utils/box_ops.py sha256=8YjrY6xJIQrbzCOfeiFRojK7a9fl8GA1WBeIAh8U__I 3974
cellotype/maskdino/utils/misc.py sha256=BkgNC-VqnsErc_B7iF6_atoPCx7YlnNWVYS-RWNaJFg 4897
cellotype/maskdino/utils/utils.py sha256=pBn3I8vuApdsI0_C9c2467HKdOF84Ke1dTED1zRlvZ4 4897
cellotype-0.1.dist-info/LICENSE sha256=HrhfyXIkWY2tGFK11kg7vPCqhgh5DcxleloqdhrpyMY 11558
cellotype-0.1.dist-info/METADATA sha256=8yVOTZnUTgifl_FloR-I4lPgesYDjYOQwDL1NbexOzw 1330
cellotype-0.1.dist-info/WHEEL sha256=2wepM1nk4DS4eFpYrW1TTqPcoGNfHhhO_i5m4cOimbo 92
cellotype-0.1.dist-info/top_level.txt sha256=uIg9QFCpCQQkAuD4x9fFIYegp8h2Matjqa8bKDsCyCk 10
cellotype-0.1.dist-info/RECORD

top_level.txt

cellotype