cehrbert-data

View on PyPIReverse Dependencies (1)

0.0.5 cehrbert_data-0.0.5-py3-none-any.whl

Wheel Details

Project: cehrbert-data
Version: 0.0.5
Filename: cehrbert_data-0.0.5-py3-none-any.whl
Download: [link]
Size: 95081
MD5: 3007d04bb86c83634e7aae153e67fb9b
SHA256: 3bb54e7594bac4a6daf06044afb151ea57a818176548e89ec9b6de643e107ddb
Uploaded: 2025-01-16 16:23:43 +0000

dist-info

METADATA

Metadata-Version: 2.2
Name: cehrbert_data
Version: 0.0.5
Summary: The Spark ETL tools for generating the CEHR-BERT and CEHR-GPT pre-training and finetuning data
Author-Email: Chao Pang <chaopang229[at]gmail.com>, Xinzhuo Jiang <xj2193[at]cumc.columbia.edu>, Krishna Kalluri <kk3326[at]cumc.columbia.edu>, Nishanth Parameshwar Pavinkurve <np2689[at]cumc.columbia.edu>, Karthik Natarajan <kn2174[at]cumc.columbia.edu>
Project-Url: Homepage, https://github.com/knatarajan-lab/cehrbert_data
License: MIT License
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.10.0
Requires-Dist: numpy (==1.24.3)
Requires-Dist: packaging (==23.2)
Requires-Dist: pandas (==2.2.0)
Requires-Dist: pyspark (==3.1.2)
Requires-Dist: pre-commit; extra == "dev"
Requires-Dist: pytest; extra == "dev"
Requires-Dist: pytest-cov; extra == "dev"
Requires-Dist: pytest-subtests; extra == "dev"
Requires-Dist: rootutils; extra == "dev"
Requires-Dist: hypothesis; extra == "dev"
Requires-Dist: black; extra == "dev"
Provides-Extra: dev
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 4396 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.8.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cehrbert_data/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cehrbert_data/apps/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cehrbert_data/apps/generate_concept_similarity_table.py sha256=FtDIC_K4h-jTv4KEM7iwzqnAuWvHq0yHODO4XbuR87Q 16556
cehrbert_data/apps/generate_hierarchical_bert_training_data.py sha256=vZ3J5biw5gky8VS_fB-jGy2LGeqR4-Qu7QIhi-9TmDE 9213
cehrbert_data/apps/generate_included_concept_list.py sha256=T8Uoagb0BZJao6E84VxpUVxaV2CBU-dLBi9s-KlyUNE 4345
cehrbert_data/apps/generate_information_content.py sha256=OE5njZ7dHR7JvEiZxch7aTjwWtc38L7YVIsrNCYgm2g 4682
cehrbert_data/apps/generate_required_labs.py sha256=bQ7cIgJQ7XfgfqW7zZQ4D1BLuGUIJeKHfI7La-HMx38 4585
cehrbert_data/apps/generate_training_data.py sha256=NBnWdnyfI7dQYjS8MzXDQdEAdTp9aIPNfQJ3hSJIFtU 13851
cehrbert_data/cohorts/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cehrbert_data/cohorts/atrial_fibrillation.py sha256=j364dX1tc3IW4Ky-rNgUA07XmNbeF6vNnfur8rCHj1A 1627
cehrbert_data/cohorts/cabg.py sha256=KVmTcnPONIy_YR86XenwOU4WecQ6zbqrR7goDjjX9AE 2018
cehrbert_data/cohorts/coronary_artery_disease.py sha256=CPfVPXfgjuoIASNApjtDu-pnqyqO8xZG6zMYM23WdXw 2792
cehrbert_data/cohorts/covid.py sha256=lZ45rockau7mKr2f0nmMoWykZnnN99AM39CJ_w2mF5Y 2037
cehrbert_data/cohorts/covid_inpatient.py sha256=w9XZDz_SUALqUrfDf3Kr_yOLDYuufN3-dklu810LhVU 3182
cehrbert_data/cohorts/death.py sha256=PB9bcWum8uMAo1POt-aUAloV5iDTG2LbhFBqJQM4w4k 1287
cehrbert_data/cohorts/heart_failure.py sha256=wUZvrEG716uYe-gkUt94uksAkljRAnOBdL1hWSwrE9k 12611
cehrbert_data/cohorts/ischemic_stroke.py sha256=ObtTt_VaQStAHi0aR0x6i6h24iuTct8KoSnP-V-B1nc 1591
cehrbert_data/cohorts/last_visit_discharged_home.py sha256=VJR-PVduiy2BvuUH6etFjwSjd5dvPTWbKjfoyabdHeU 1173
cehrbert_data/cohorts/query_builder.py sha256=PDBWgWKcjtUplVyy8CuoGeGYZW9FqmIYFPYUNYcnVLg 4046
cehrbert_data/cohorts/spark_app_base.py sha256=U1p6sKF-HVQTksj3sTVDygrZhsz2kDu-Zp-1RgNFbcA 36003
cehrbert_data/cohorts/type_two_diabietes.py sha256=by69COcT9IRRR2Oo-ImcMutPxz3FPyqFo0ri-WL5JdE 4438
cehrbert_data/cohorts/ventilation.py sha256=p1zUFhfb1z4yYpqY7hF95VubwJnDMEbTBu4kUMpLwPc 602
cehrbert_data/config/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cehrbert_data/config/output_names.py sha256=vfBQH6PrS-Sid-4P8pyMPa7RGzMearzb6OtnSY4egJg 412
cehrbert_data/const/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cehrbert_data/const/artificial_tokens.py sha256=-UdLQV1azznvpEjBZX_u0vsrcOlI4U-FSWW1I0dWUfE 60
cehrbert_data/const/common.py sha256=VavE4LTE91tNdZaPl-HqqQTktojm0V8Qi5viAICZz4I 956
cehrbert_data/const/__pycache__/__init__.cpython-311.pyc sha256=bZZpR6BSdWv8VHxs-c11SK-1OBG9lOfsEju-atuYnN0 173
cehrbert_data/const/__pycache__/common.cpython-311.pyc sha256=5u0y_dafZAY_P-BMuL6GzfZHcBByd_qk-4XQl6QXqTE 869
cehrbert_data/decorators/__init__.py sha256=TmbeHYSfSHxDh_wB0XQ1Ge3ANS3p-oQXIb84uXylMKI 330
cehrbert_data/decorators/artificial_time_token_decorator.py sha256=A3zS9oshm0qOJzWHTBS8W1ojTjmWk_8AknHRI5OEvzQ 19383
cehrbert_data/decorators/clinical_event_decorator.py sha256=bPohHY4XROBjqZMp6Myg_zPWvfOyJL02SnwfxNurgv8 8525
cehrbert_data/decorators/death_event_decorator.py sha256=wVXaJYdpZ5brS0gkObD5pldERTE6Y1uK0hdo07LRVSY 4632
cehrbert_data/decorators/demographic_event_decorator.py sha256=8AwUMwDET6Yo7RlbO5yeX3f6z1z17Xg7-PRwmlMSNzc 6002
cehrbert_data/decorators/patient_event_decorator_base.py sha256=aNlTe8FHfB2WP5D7eYdW9MoH1jlR3K6_o_ZN8pESlSE 5426
cehrbert_data/decorators/token_priority.py sha256=VAvLlZFFdz1dC__zcPzhnlR2rMCU3kfxELTMlIzWJkE 608
cehrbert_data/prediction_cohorts/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cehrbert_data/prediction_cohorts/afib_ischemic_stroke.py sha256=sBwHAxJUjq9qd0sTNOHwajA2uZgpbhesj4az5-rc-gw 596
cehrbert_data/prediction_cohorts/cad_cabg_cohort.py sha256=7HcYivw1Rxkb_3Fqq2HnGCqD_W8xMYeKEAO-Lr0Q13A 748
cehrbert_data/prediction_cohorts/cad_hf_cohort.py sha256=qveT7IKQ76ySq5hbj7mBgPG13IYKiwQMYBMqjAANREU 712
cehrbert_data/prediction_cohorts/copd_readmission.py sha256=knBhzLwEcWssO6gYruAXR-C8UgiFv6QZH3MfPp1CRzg 2388
cehrbert_data/prediction_cohorts/covid_death.py sha256=p2YZFCPuyu9lj6wnIe4Esor1GJX87Bu0-Jrfr5xpb5w 568
cehrbert_data/prediction_cohorts/covid_ventilation.py sha256=1A10sPhT6QFWsj5vDhUt2PtI2TxvGldrFhVsrbjFS1E 560
cehrbert_data/prediction_cohorts/discharge_home_death.py sha256=Z_45Xn49-FEMs-3hWKJ4NYI9LgkkWV0UnpnTzv-y-7Q 744
cehrbert_data/prediction_cohorts/hf_readmission.py sha256=8YAhl9WAm2TE9DByRnPVUDIILMIlDwibHFDYYIKJDJA 2794
cehrbert_data/prediction_cohorts/hospitalization.py sha256=uR3uh6UdfInNvP0G2hgqWAYe7BF0xJ-cA4s1vTxyI5Y 3483
cehrbert_data/prediction_cohorts/hospitalization_mortality.py sha256=TnUp6P-vKEcbej2LMBBu2TH3PaztJlDlIgCFu_9Awi0 2537
cehrbert_data/prediction_cohorts/t2dm_hf_cohort.py sha256=Bi4FC9WfsJ0Lduix5AiC4zUozGRY8xWfb21CLGCJS48 709
cehrbert_data/queries/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cehrbert_data/queries/measurement_queries.py sha256=-xWwEYRot7PvJAUhB8Nw8EXO_p7FMyUu4ej_zourJXM 1957
cehrbert_data/tools/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cehrbert_data/tools/connect_omop_visit.py sha256=oJINZf721KuKdUl9RuBNARdBSjyGXvsGvEW4uxxCgZ4 11816
cehrbert_data/tools/download_omop_tables.py sha256=_OptmR9UjP--1O3-TXQw36GGMDZZ9sLaO4_uUdV2g3M 4866
cehrbert_data/tools/ehrshot_to_omop.py sha256=TeGFl1EMWxZrks48ERUSNnI22cjkbXjLLnz5fky_ui0 38061
cehrbert_data/tools/extract_features.py sha256=vFKsaYS2_wIsE5ez6zEzql_RkiTy6KFqPN-fN2cS-EI 11343
cehrbert_data/tools/prepare_ehrshot_cohorts.py sha256=_VPVgvqXhYoqwufG2b7G7I8lXWhJB4tcAG5nxELXBVs 917
cehrbert_data/tools/update_omop_visit.py sha256=eBcuPn3hFxFKL0x10i_ALxYxt8iPjKMU3InjMVNhCHE 2227
cehrbert_data/utils/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
cehrbert_data/utils/logging_utils.py sha256=bh__UEopQeCdZpUJCXcPOhEqRvWZXapWCrUFwd6kX0s 329
cehrbert_data/utils/spark_parse_args.py sha256=jSImAScFrhvlcU6-kXcYpQTVxJBLR4Q5MSTKhyEvack 14193
cehrbert_data/utils/spark_utils.py sha256=5crLOfNbyukFZ4B4V1Geu6gG7lyPRHhYE7uQSNLQMGk 59504
cehrbert_data-0.0.5.dist-info/LICENSE sha256=LOfC32zkfUIdGm8e_098jPbt8OHKtNWymDzxn2pA9Zk 1093
cehrbert_data-0.0.5.dist-info/METADATA sha256=mSidpLjskDaoiNF9wq42JCvZr9_1oozWwc8npG6LEcA 5659
cehrbert_data-0.0.5.dist-info/WHEEL sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8 91
cehrbert_data-0.0.5.dist-info/top_level.txt sha256=13C5PgcEOPVX6zYmrIyvX4lHm-XvdfeVB9Ca4yk14zQ 23
cehrbert_data-0.0.5.dist-info/RECORD

top_level.txt

__init__
cehrbert_data