casanovo

View on PyPIReverse Dependencies (1)

4.3.0 casanovo-4.3.0-py3-none-any.whl

Wheel Details

Project: casanovo
Version: 4.3.0
Filename: casanovo-4.3.0-py3-none-any.whl
Download: [link]
Size: 61721
MD5: caff8c25fdcb4dfe9956be278017ef1d
SHA256: 5a0506335fd84dc8e87a875f61e76f82617406c7298f2ddb8a94f9e0a5f1e6b9
Uploaded: 2024-12-13 13:57:46 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: casanovo
Version: 4.3.0
Summary: De novo mass spectrometry peptide sequencing with a transformer model
Author-Email: Melih Yilmaz <melih[at]cs.washington.edu>, "William E. Fondrie" <fondriew[at]gmail.com>, Wout Bittremieux <wout.bittremieux[at]uantwerpen.be>
Project-Url: Homepage, https://github.com/Noble-Lab/casanovo
Project-Url: Documentation, https://casanovo.readthedocs.io
Project-Url: Bug Tracker, https://github.com/Noble-Lab/casanovo/issues
Project-Url: Discussion Board, https://github.com/Noble-Lab/casanovo/discussions
License: Apache 2.0
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: OS Independent
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.8
Requires-Dist: appdirs
Requires-Dist: lightning (>=2.0)
Requires-Dist: click
Requires-Dist: depthcharge-ms (<0.3.0,>=0.2.3)
Requires-Dist: natsort
Requires-Dist: numpy (<2.0)
Requires-Dist: pandas
Requires-Dist: psutil
Requires-Dist: PyGithub
Requires-Dist: PyYAML
Requires-Dist: requests
Requires-Dist: rich-click (>=1.6.1)
Requires-Dist: scikit-learn
Requires-Dist: spectrum_utils
Requires-Dist: tensorboard
Requires-Dist: torch (>=2.1)
Requires-Dist: tqdm
Requires-Dist: sphinx (>=4.5.0); extra == "docs"
Requires-Dist: myst-parser (>=0.18.1); extra == "docs"
Requires-Dist: sphinx-book-theme (>=0.3.3); extra == "docs"
Requires-Dist: pre-commit (>=2.7.1); extra == "dev"
Requires-Dist: black (>=19.10b0); extra == "dev"
Requires-Dist: ppx; extra == "dev"
Requires-Dist: psims; extra == "dev"
Requires-Dist: pyteomics; extra == "dev"
Requires-Dist: pytest; extra == "dev"
Provides-Extra: docs
Provides-Extra: dev
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 1281 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.6.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
casanovo/__init__.py sha256=ADLbl-WE8ZnEZkZO0d6DO-WduzEAFH0UB2SlCvjPXNM 65
casanovo/casanovo.py sha256=NP_wxIKdQEguIvDFXGGbJ-Kj9nYg5P0eeCvH5Hmf4Sw 15938
casanovo/config.py sha256=e2dddzhJyyeAP-TmaupOEHy_ZzGGkocK_M8Ua0TVY30 5549
casanovo/config.yaml sha256=k3Z8rD3Vbiy7GG52ib0-kSSvhksw0zvh3FKjB7CcyAU 4493
casanovo/utils.py sha256=4K5rAIzkAIhWDoL0pskoTniqVgesFjNEWalGJAD40X8 1728
casanovo/version.py sha256=H4kPTuMMHDS6C9nZkIN7PfhWrVCOIGygFyS6fQLtqWk 972
casanovo/data/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
casanovo/data/datasets.py sha256=Ml8Wr_j0dsAk6seT-pU2Sxcn1MLbo8ScseFYvb4zofA 8547
casanovo/data/ms_io.py sha256=ftiPXJcGweKvLPJuOEjB-QwE36YiZCj3sE4geauG8j0 7574
casanovo/denovo/__init__.py sha256=1HlE9oSPGI15ej-qX5ONhejP9CDU9eVBLHKxJsjrEoE 38
casanovo/denovo/dataloaders.py sha256=-G39Iuyiqtv3vHZBimsBN8G_bb39v3o0S_hCG2lSOVQ 7935
casanovo/denovo/evaluate.py sha256=n2jQQhkb5nzuSjRPdZO1LgKttYtvfcbxCQMpM3g-77M 11423
casanovo/denovo/model.py sha256=4TEYNziYtYZHiARYzGoQ7CJ7wbgzhMPQ_Dqxv3rHozg 42086
casanovo/denovo/model_runner.py sha256=3v9gOlTA-wcsEo7XSLqlYUfet2DPUqB_OtUwxNlPntA 15513
docs/images/configure-help.svg sha256=XPOQSh95golhclRTgZlMAWhe67Q1d01K4-A01_xaYfs 9992
docs/images/evaluate-help.svg sha256=PfUgFaW5ZhcaHSutho0vdOWHvgY180BK1cPeFPUkI80 25076
docs/images/help.svg sha256=Y_vmNGUBcXc4Eh3rN_wcSMo0Mm3t-t7QRryomLT6VeU 26107
docs/images/sequence-help.svg sha256=VX6_VjP6kfD8epD_Fln_fCOWzFwK67C2P7Q0aqQT1VU 25161
docs/images/train-help.svg sha256=lEJUIqGncPYlIoxLOUY4n1zxgx_qTqHE2SCyQqJNIwE 38283
tests/unit_tests/test_config.py sha256=_qsD_CsxEq4rLQU-bH9ORKBzkT73AmQb5NQ2GBfIex4 1501
tests/unit_tests/test_runner.py sha256=3i2XEgGaCmoD1ZTlFMgOInbsIF23v7m_8FQz7yGG4VM 5591
tests/unit_tests/test_unit.py sha256=O0S9S-L5uY1UNyCi5adT8i_Vii5R4Xktwn6UvLQtsQw 22815
casanovo-4.3.0.dist-info/LICENSE sha256=kG7biRoW9r9YUq3FMEajk9SpNAJrWE__op72W0nbQxE 11342
casanovo-4.3.0.dist-info/METADATA sha256=6PKXZAGZtejy4lDq9T1IpBx3lNfVX4eaIrx6umcxP2I 3045
casanovo-4.3.0.dist-info/WHEEL sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U 91
casanovo-4.3.0.dist-info/entry_points.txt sha256=cG2p2HzkGW6_Nva9PjICbaWTOgYKX8nBHgrDLSuCTME 52
casanovo-4.3.0.dist-info/top_level.txt sha256=Hp8MsdyIPQwY8eT2RBV9DOIbKk5Hs-Nh6w2zkzSnCE4 25
casanovo-4.3.0.dist-info/RECORD

top_level.txt

casanovo
dist
docs
tests

entry_points.txt

casanovo = casanovo.casanovo:main