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betterbasequals

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0.3.0 betterbasequals-0.3.0-py3-none-any.whl

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Project: betterbasequals
Version: 0.3.0
Filename: betterbasequals-0.3.0-py3-none-any.whl
Download: [link]
Size: 35488
MD5: 4dc78b86252d8b500cb7f527015111c2
SHA256: b709dad043b21600faaa35c1a145aae57dc18b72cb43ea56f4fe8e765888ab86
Uploaded: 2025-02-28 13:54:12 +0000

dist-info

METADATA · WHEEL · RECORD · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: betterbasequals
Version: 0.3.0
Summary: SNV variant caller that uses discordant overlapping read pairs to calculate sample-specific base error rates.
Author: Søren Besenbacher
Author-Email: besenbacher[at]clin.au.dk
Home-Page: https://github.com/besenbacher/BetterBaseQuals
Project-Url: Repository, https://github.com/besenbacher/BetterBaseQuals
License: MIT
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Requires-Python: >=3.8,<3.11
Requires-Dist: jinja2 (<4.0.0,>=3.1.4)
Requires-Dist: kmerpapa (<0.3.0,>=0.2.4)
Requires-Dist: pandas (<3.0.0,>=2.1.3); python_version >= "3.9" and python_version < "3.11"
Requires-Dist: py2bit (<0.4.0,>=0.3.0)
Requires-Dist: pysam (<0.20.0,>=0.19.1)
Description-Content-Type: text/markdown
[Description omitted; length: 2136 characters]

WHEEL

Wheel-Version: 1.0
Generator: poetry-core 1.7.0
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
betterbasequals/__init__.py sha256=fykmpmYy7OyHiuZRxKRQ1a7ca_mAlZtkwXhQrQT0CsY 136
betterbasequals/__main__.py sha256=e-RPA8JzoRGmQYdj2tLY7kicDc5xIrqXt_wbghV30tI 184
betterbasequals/bam_adjusters.py sha256=N_L0phAWrNDdekKWeyi3r0PMlwzwM51fkKsYJOm-TCA 3893
betterbasequals/cli.py sha256=HwCxTa0iK9PdQet5wR61A1Zcx-JKwFRUp14QfOnAsDs 32879
betterbasequals/filter_calls.py sha256=pTS3xOMdVZh-qvj-Fw4Li4iaNgQkygBCP7PNNQmyQl4 2343
betterbasequals/get_good_bad_kmers.py sha256=gIG_Gx2GSxY8xMbguwUvQ7bzeHev-EzqgpQZ5_RbpRI 9746
betterbasequals/kmerpapa_utils.py sha256=LLHepti0uoIUYUHUfHHbJGKVMeoVJLpmDMmn7uNxcmc 3767
betterbasequals/model_validators.py sha256=2DXw8kyzV242PUanu4o90hZ692Dp2dotEQbLp3_eqvs 19396
betterbasequals/pilup_handlers.py sha256=Ng83rXMjWBMxcw4bCa3I3m8QHvAszMgVB-3SlvtGpQU 28334
betterbasequals/quality_utils.py sha256=vSc8tbeZDEWMU02Py2J6iu4KAvjJG99pcxk2xzQZtus 1614
betterbasequals/somatic_callers.py sha256=H0XMpWvKteZFqpo2iinI6pk2fFyLEUeaFW7W1Wm6z5g 26842
betterbasequals/utils.py sha256=HyZWNYDg0UKnLJTfdNe27dw_lpQltr-vKT79Y9rmVj8 19184
betterbasequals-0.3.0.dist-info/LICENSE sha256=nY7UyKMqCYOAsu52cqWR5KgNz8cqmryjBjMMUOlrB6w 1075
betterbasequals-0.3.0.dist-info/METADATA sha256=aP3wCwaMcv531uk39-GTyCWFt8NDkdbqBoTyLbGPp9E 3093
betterbasequals-0.3.0.dist-info/WHEEL sha256=d2fvjOD7sXsVzChCqf0Ty0JbHKBaLYwDbGQDwQTnJ50 88
betterbasequals-0.3.0.dist-info/entry_points.txt sha256=OIWUC5mYb70JtBfZeDK9Y_VaGnzEfUWyIVSn_O_l5AI 48
betterbasequals-0.3.0.dist-info/RECORD — —

entry_points.txt

[console_scripts]
bbq = betterbasequals.cli:main