bedboss

View on PyPIReverse Dependencies (0)

0.6.0 bedboss-0.6.0-py3-none-any.whl

Wheel Details

Project: bedboss
Version: 0.6.0
Filename: bedboss-0.6.0-py3-none-any.whl
Download: [link]
Size: 112378
MD5: c2ffc1d5536b7ef3bf5ae4359e0595cc
SHA256: e307f5663b4c2e763f081590520d5ff3ab40e175162c75b798e5173d29662def
Uploaded: 2025-01-17 16:49:15 +0000

dist-info

METADATA

Metadata-Version: 2.2
Name: bedboss
Version: 0.6.0
Summary: Pipelines for genomic region file to produce bed files, and it's statistics
Author-Email: khorosh[at]virginia.edu
Home-Page: https://databio.org
License: BSD2
Keywords: project,bioinformatics,sequencing,ngs,workflow
Classifier: Development Status :: 3 - Alpha
Classifier: License :: OSI Approved :: BSD License
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Dist: logmuse (>=0.2.7)
Requires-Dist: coloredlogs (>=15.0.1)
Requires-Dist: eido (>=0.2.4)
Requires-Dist: peppy (>=0.40.7)
Requires-Dist: yacman (>=0.8.4)
Requires-Dist: requests (>=2.28.2)
Requires-Dist: piper (>=v0.14.3)
Requires-Dist: bbconf (>=0.10.3)
Requires-Dist: refgenconf (>=0.12.2)
Requires-Dist: pandas (>=2.0.0)
Requires-Dist: ubiquerg (>=0.6.2)
Requires-Dist: bedms (>=0.1.0)
Requires-Dist: pephubclient (>=0.4.4)
Requires-Dist: geniml[ml] (>=0.6.0)
Requires-Dist: gdrs (>=0.1.0)
Description-Content-Type: text/markdown
Dynamic: author-email
Dynamic: classifier
Dynamic: description
Dynamic: description-content-type
Dynamic: home-page
Dynamic: keywords
Dynamic: license
Dynamic: requires-dist
Dynamic: summary
License-File: LICENSE
[Description omitted; length: 2036 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.8.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
bedboss/__init__.py sha256=z7Q82S1c-e5VRSU6owhX6Si8hk7QMeH8vTNIaLFRZ-Q 1342
bedboss/__main__.py sha256=o0KNHf14O-WYYijOFo3EAYLeAUsfTi0X7Ee-IYp1uBg 280
bedboss/_version.py sha256=cID1jLnC_vj48GgMN6Yb1FA3JsQ95zNmCHmRYE8TFhY 22
bedboss/bedboss.py sha256=-qN7vY6rlDvcnDqV5sU6DY1rRiHXSZeFpNbiBIGwqbw 22431
bedboss/cli.py sha256=EvgSaxGNQhJL1Xaxn4rvXzDeAhA4zlGfT7HbpgWlq08 22106
bedboss/const.py sha256=hqRES7xjPsOmOtly80gflkab1Y46595BZ3kiRQiALD0 1129
bedboss/exceptions.py sha256=QNppfgeofjDiKEnxwZJH790BJxCXkRSj3GWH-JfwBxY 2303
bedboss/models.py sha256=igF1VvdcEhZo5rMGyUotb8Sroi2l9X8yOl8h2rFzdvA 4049
bedboss/skipper.py sha256=tzosVD3mQn8P-s9hLbeyyu47j9WqL9tDJP9_q9DphAY 3164
bedboss/utils.py sha256=vtthK88nJ4FFlV6l4XL-deWWERWrUHFTZFsRPHszgvc 7271
bedboss/bbuploader/__init__.py sha256=mBhO8Q_l7FnE8erGt-9sXnKiRL9rRE4zuKES400rD7s 287
bedboss/bbuploader/cli.py sha256=qan4d3TPdGTUDq5XERuoS7LLSZpWzPvde0lFvvfwT4I 5783
bedboss/bbuploader/constants.py sha256=REHaIe9khwkA78eKyN9-yba8UT9XXBQXDq6wVCCOi6c 221
bedboss/bbuploader/main.py sha256=dFWfUB9Y3IDvrks6vJyk6xGhNRgqeTzItte1A7_-Bxs 23078
bedboss/bbuploader/models.py sha256=4Q5J7kyeYJMq1rsTbC_ecYZQNH9w8JavSpJknokk4fA 1822
bedboss/bbuploader/utils.py sha256=ONOmXQPx-0bdXEmKA3FW9WBWu34EccO3i6YSTnp3lAk 1203
bedboss/bedbuncher/__init__.py sha256=66JRl4tqxAmNGt0Zp2DQ4NZF86IPeQb8-9kF_mcprs8 139
bedboss/bedbuncher/bedbuncher.py sha256=ecgW-GF514qFfP2CFNpRzs2Y2tMglLfc15WAWOZ0hGI 8082
bedboss/bedbuncher/tools/bedsetStat.R sha256=Do5KqzxRlZzaQDE6rfUAr3IoI_S4qRLAvY4yu5-Qky4 5114
bedboss/bedclassifier/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bedboss/bedclassifier/bedclassifier.py sha256=wxlcl5U9uO8CYvthTzueNsTk5ZwMOpakC9SnNkI4b5Y 9359
bedboss/bedmaker/__init__.py sha256=Jm8rgJ4BO4B2wF1ilVBQsVaXj9D3vj9W0G0oFRVYCiA 105
bedboss/bedmaker/bedmaker.py sha256=Lg7U0ynWu1WCPclazK68QX4Sqzl5RL2qoUOPqhI-jJ0 14897
bedboss/bedmaker/const.py sha256=CGzmUi8qkYuY4rDSYo-zHvAuqpHRT_hxAJUhW9mWb24 986
bedboss/bedmaker/models.py sha256=YFh1KOo_kXnM7IIm8uKWK2V_TzBZgKyrb8XooAOrYjk 626
bedboss/bedmaker/utils.py sha256=uAtlSWqVuEjKXgAOSBHC30j2xMuzK0aAGqaSrlYAiSw 2986
bedboss/bedqc/__init__.py sha256=zgkqZk0IXXwQOYT4UOGAzRhrwRqtbn5IBXupmbazXRA 46
bedboss/bedqc/bedqc.py sha256=40QCjoQC-4VVmInXytbSA3x3lcEL9oX2HxpmJ9pweIU 3378
bedboss/bedqc/est_line.sh sha256=nTZWqcmWRdl4UFxj5nywafbIJYeCe7NrsSEMIQHUY24 376
bedboss/bedstat/__init__.py sha256=XkkHz29tppeiLMT3zJGExYlYPCx64WVMeAbQgqWSgVk 52
bedboss/bedstat/bedstat.py sha256=o9LX7XymvzfqOSiniwrjZL44NNXxl0AIEH-WdMoqp2Q 6987
bedboss/bedstat/gc_content.py sha256=s89jhVGHbBwaUDxvi8MYhAxv8tA3GUC3mJ3eGYWnzB0 3759
bedboss/bedstat/tools/regionstat.R sha256=NkpVq6yuJmWTqWWxJCTPBVa4mrZI9Sw8_v9LGHgdttk 15656
bedboss/qdrant_index/__init__.py sha256=LsK4_0PQ-iJWy6I1KFm-9ZPkU4mjlZ7v9T8Un34t-JU 89
bedboss/qdrant_index/qdrant_index.py sha256=4RldzLdGPtBMcQDizSVTBLyzsuOUoVxXzXiL_XzWVr4 305
bedboss/refgenome_validator/README.md sha256=k6XMQEBipuFxiQTsNLR-_cUFR81sben5TOI-dZdvfgc 2521
bedboss/refgenome_validator/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bedboss/refgenome_validator/const.py sha256=Ex8far6XPZID406tMIo7OVwfqNN_UIQHjqCxbTS6ZFw 356
bedboss/refgenome_validator/genome_model.py sha256=9QXe6Teh0DRCu0fDMpooOxYk2elK76BlLgnT5eBpXrs 2458
bedboss/refgenome_validator/main.py sha256=W3pSGwSGv3akiZKxDrdJOyC_Y0jh_g1hRVvRb-iaAnU 16675
bedboss/refgenome_validator/models.py sha256=xm3YwcyP9CgBhgZ0Y6exZR1ntIzYg_7Sawl7MPyAwNA 1241
bedboss/refgenome_validator/utils.py sha256=exOAriw2sDVYSaqRkw_SrC7FCG1fLopSpTNCmpqGP-o 2012
bedboss/refgenome_validator/chrom_sizes/ensembl_hg38.chrom.sizes sha256=_jNkOnh7WFkU9qU_D2i21fZL_su2Dgw19qFzQrqWa4M 2150
bedboss/refgenome_validator/chrom_sizes/ncbi_hg38.chrom.sizes sha256=bPN05kX6M4gwyiuiL8wBZgsdZx7h0qDPjZRJt0g89-U 14205
bedboss/refgenome_validator/chrom_sizes/ucsc_dm6.chrom.sizes sha256=-asVa7X301Mr8vUqtYZXI0E8ch2vU62ySfvvBtLkJs0 45054
bedboss/refgenome_validator/chrom_sizes/ucsc_hg19.chrom.sizes sha256=kpugevANA3dJIwPliwoFA-5a2zb-8BxdLx2cQ-72vZs 1970
bedboss/refgenome_validator/chrom_sizes/ucsc_hg38.chrom.sizes sha256=Osw3EITwHOYGGjJH7_uQDmZzZEZB2-0okwFQ6I7CSCk 11671
bedboss/refgenome_validator/chrom_sizes/ucsc_mm10.chrom.sizes sha256=8-2XHCJrkcdqUTJ70gij3ZcnXD66JfPVXw4SEYrU0vY 1404
bedboss/refgenome_validator/chrom_sizes/ucsc_mm39.chrom.sizes sha256=UNApTgw6FV7-D6qyQNxvYNdLJV8TvOtXmmlMVa-KUrs 1349
bedboss/refgenome_validator/chrom_sizes/ucsc_mm9.chrom.sizes sha256=VzegoqXrcSu6DjNWXo1vLGjJuJvPqZLcItoMje9ejc4 584
bedboss/refgenome_validator/chrom_sizes/ucsc_panTo6.chrom.sizes sha256=aZjhfKkxuf2k83-19-IJWxCtGdZUmRZ0q6dvj67IUfQ 116512
bedboss/scripts/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bedboss/scripts/check_R_req.R sha256=HwD8otHK6mD3kq7CFo_IFEt2zFnuG55lt1fDH4CD7B8 1528
bedboss/scripts/installRdeps.R sha256=r01nFWbDX2ALF9Hg57FVEl8KP_sGbOlEoWZIssjWqPI 1111
bedboss/scripts/requirements_test.sh sha256=1jp5W6Myq-0hhE4rQwyksTiaxrPQqZndFwnokdj-FU0 4666
bedboss/tokens/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bedboss/tokens/tokens.py sha256=p4zrPcBxwMC3dLNWfrhBiL81fnP_EZEQJP_k03fSpEE 2339
bedboss-0.6.0.dist-info/LICENSE sha256=icA6c2AfOgBvINrm_KlxDyulzJyUi6UxJk2s1SH-vDI 1269
bedboss-0.6.0.dist-info/METADATA sha256=j06qrrTDPQwItADH5wKIvR7rMW6EaHnTs5JwJQOO624 3382
bedboss-0.6.0.dist-info/WHEEL sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8 91
bedboss-0.6.0.dist-info/entry_points.txt sha256=yTGxiN0NK3gjCA3bmPvpKKfJNEDPAU-31-scMm3qVG0 50
bedboss-0.6.0.dist-info/top_level.txt sha256=0sxFCymGYMVSuZOuQddZbwtBQODp3k1i6NicCExwk4s 8
bedboss-0.6.0.dist-info/RECORD

top_level.txt

bedboss

entry_points.txt

bedboss = bedboss.__main__:main