Reverse Dependencies of bcbio-gff

The following projects have a declared dependency on bcbio-gff:

• AnnotationCheckerWithStructure — A simple bioinformatics script.
• anvage — toolkit to process routine operation on gff3, vcf and fasta files
• apollo — Apollo API library
• apollo-sdk — A radically simple framework for ML/AI model management
• aqbt — Aquarium strain builder tools
• BacterialTyper — no summary
• bio-util — Library of bioinformatics-related utilities
• BioSeqTools — A small tool for analyzing biological sequences
• chado — Chado library
• CMSeq — Set of utilities on sequences and BAM files
• deciphon-api — RESTful API for Deciphon scheduler
• edge-genome — Genome Engineering Tool
• edgepy — no summary
• ensembl-genomio — Ensembl GenomIO -- pipelines to convert basic genomic data into Ensembl cores and back to flatfile
• gff-to-genbank — Script to convert from GFF to Genbank
• gff3toddbj — Create a DDBJ annotation file from GFF3 and FASTA files
• gfflu — Annotate Influenza A virus gene segment sequences and output GFF3 files.
• gogstools — GenOuest tools for manipulating Official Gene Sets
• HugeP2G — Aligning a large number of protein sequences to a genome (use genblasta and genewise)
• MobileElementFinder — Mobile Genetic Element prediction
• mutalyzer-retriever — Mutalyzer genomic reference retriever.
• nextstrain-augur — A bioinformatics toolkit for phylogenetic analysis
• nmdc — Command line toolbox of NMDC (https://microbiomedata.org/)
• Pharokka — Fast phage annotation tool
• readtagger — Tags reads in a BAM file based on other BAM files.
• rRNAFinder — A python tool for identify rRNA gene in plant genome.
• ship-plasmid — Finds regions with evidence of HGT between plasmids and groups plasmids according to evolutionary dynamics.
• smallgenomeutilities — A collection of scripts that are useful for dealing with viral RNA NGS data.
• sndg-bio — My bioinformatic scripts
• ssbio-edbr — Tools to enable structural systems biology, forked from SBRG/ssbio
• teritori — Replications origin and terminus prediction in bacterial genomes
• ToolBiox — a biological toolkit for genome assembly, annotation and analysis that we have accumulated from our bioinformatics work
• vcfsynonymous — Detect synonymous genetic variants in VCF
• wgscovplot — Create interactive comparative sequencing coverage plots from virus sequencing data.
• yxcompgen — Xu Yuxing's personal comparative genomics tools
• yxseq — Xu Yuxing's personal tools for biology sequence analysis