Reverse Dependencies of bbknn

The following projects have a declared dependency on bbknn:

• besca — Collection of BEDA internal python functions for analysing single cell RNAseq data.
• DeSide — A unified DEep-learning and SIngle-cell based DEconvolution method for solid tumors
• ecmanalysis — Tools for analysis of the extracellular matrix
• genomap — Genomap converts tabular gene expression data into spatially meaningful images.
• IMC — A package for processing and analysis of imaging mass cytometry (IMC) data.
• panpipes — Panpipes - multimodal single cell pipelines
• popv — Consensus prediction of cell type labels with popV
• rapids-singlecell — running single cell analysis on Nvidia GPUs
• scanpy — Single-Cell Analysis in Python.
• scanpy-scripts — Scripts for using scanpy from the command line
• sceleto — Tool to aid in single cell analysis (temporary description)
• scib — Evaluating single-cell data integration methods
• stereoAlign — A toolkit package of data integration