baseq-drops

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0.3.5 baseq_drops-0.3.5-py2.py3-none-any.whl

Wheel Details

Project: baseq-drops
Version: 0.3.5
Filename: baseq_drops-0.3.5-py2.py3-none-any.whl
Download: [link]
Size: 75181
MD5: 7cc4d59ffd2e872b209ae43e21da1b65
SHA256: db87605795e8e536b5bff3cb2d751561897aca887826c6c855c09b65c8376fdf
Uploaded: 2018-05-29 10:55:51 +0000

dist-info

METADATA

Metadata-Version: 2.0
Name: baseq-drops
Version: 0.3.5
Summary: Pipeline for processing Drop-seq/10X/inDrop datas
Author: Xiannian Zhang
Author-Email: friedpine[at]gmail.com
Home-Page: https://gene.pku.edu.cn
Keywords: sample setuptools development
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Topic :: Software Development :: Build Tools
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.6
Requires-Dist: click
Requires-Dist: configparser
Requires-Dist: jinja2
Requires-Dist: matplotlib
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: check-manifest; extra == "dev"
Requires-Dist: coverage; extra == "test"
Provides-Extra: dev
Provides-Extra: test
[Description omitted; length: 1688 characters]

WHEEL

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Tag: py2-none-any
Tag: py3-none-any

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top_level.txt

baseq

entry_points.txt

baseq-Drop = baseq.drops.cmd:cli