| Path |
Digest |
Size |
| BacterialTyper/__init__.py |
sha256=rH6qY24aQa97Qz6g6O_CAbTGJgL6HRa3bqCKePs3Tgg
|
458 |
| BacterialTyper/config/__init__.py |
sha256=hIea9Olc0I1gNPJtq3Ix4spK8RAwtYq5gvGfmTa-204
|
129 |
| BacterialTyper/config/extern_progs.py |
sha256=5UZoBt5OE0_6dyYqZX7aXE6MSoPqJSddZwEI8p6cBgo
|
6906 |
| BacterialTyper/config/install_dependencies.py |
sha256=P0zNesjRQwKflHriZqhKlghZBkJRBWzAXi9-gfA2VB4
|
18024 |
| BacterialTyper/config/set_config.py |
sha256=km7Ec9XNCkUBGPh-wz1XjKSzJzXuQvDKbUpe-NBz4gI
|
32763 |
| BacterialTyper/config/R/R_dependencies.csv |
sha256=_tm4RTJ0PcuY6IZgMpZKVZBpZwRhVEKSjiq_hFql8eE
|
99 |
| BacterialTyper/config/R/R_package.info.txt |
sha256=ZLSsjmCZHRv_olK1oLVc9FEdKw8yY_Efds1U68H__6E
|
78 |
| BacterialTyper/config/R/check_install_path.R |
sha256=u6cBViqCB8bk20PzJR-4Y5IaKY9FSxE99PVpeCYU1Zc
|
448 |
| BacterialTyper/config/R/check_install_system.R |
sha256=hymQIjH7gBMkVZWlp7143Z0X8GYybhUvSHC3-xaJTpo
|
298 |
| BacterialTyper/config/R/install_github.R |
sha256=GPVKNXPhUW5-qRjxe2eQx6Ljl5B94DLfOMZYztV1Bsc
|
452 |
| BacterialTyper/config/R/install_package.R |
sha256=FUcHPF4FTSWZMt0CMOLJVUDv_-V605BAbhgxK81cPKQ
|
405 |
| BacterialTyper/config/perl/IslandPath_dependencies.csv |
sha256=JXacKGqSLRJlSmVr574-Z4YP3dUMPw-GEvd7XuAl6XQ
|
1235 |
| BacterialTyper/config/perl/install_perl_packages.py |
sha256=G19v0b2GMvrNgyEZ7I6O2JvA0JAYM0b2Ctt5I3ySEUE
|
6040 |
| BacterialTyper/config/perl/perl_dependencies.csv |
sha256=ii8-HIRM9EKvBSORqDPA4Nqx0-T9-Ae2tQ_qjHF5Up4
|
413 |
| BacterialTyper/config/python/name_conversion_module.csv |
sha256=vxtYvfxAL_iZqzV1SnL21fgbOqqa4jW9aLADqkizQLM
|
100 |
| BacterialTyper/config/python/python_requirements.txt |
sha256=DI1SW61k7yzUkMf1LSIi227vJiteSPDN3FLhwBkR9g4
|
1402 |
| BacterialTyper/config/python/python_requirements_summary.csv |
sha256=XD5wNfCTDhnqUplqW8EL4ASkx68T5mn5KbjJAEACcvI
|
349 |
| BacterialTyper/config/software/dependencies.csv |
sha256=_e8_75mTgmEUxYWF5kfWkhHA8NMmOyUMSEB3LO9t7aE
|
1829 |
| BacterialTyper/config/software/software_details.csv |
sha256=imKZ29whrK6N6W02zLjcZ7tWsgFvjL2VajXFx9kOtyg
|
1001 |
| BacterialTyper/data/BUSCO_dataset.csv |
sha256=QcLpAf9b1I1e6d8TrDXRTXUbtfl1cmbu7LToCfzP_vM
|
2396 |
| BacterialTyper/data/PubMLST_datasets.csv |
sha256=3xzCqMTbYwACKPAarGuvpZkFhcMeAZyP_xrnyUnfuOI
|
5075 |
| BacterialTyper/data/__init__.py |
sha256=q3a_-X3_NOldCjLNpuQRhs1UaqIbADxp9p77aK703d0
|
72 |
| BacterialTyper/data/__init__.pyc |
sha256=f-dMeCy8Lu5oBBMZOiUxmOlCD8ByXrlgj401qSMbU3E
|
257 |
| BacterialTyper/data/available_Trimmomatic_adapters.fasta |
sha256=j080By8WvDEOlq89-sd46qV-fU-qZrpSTha1zDyEQHU
|
1448 |
| BacterialTyper/data/available_Trimmomatic_adapters_info.csv |
sha256=6MMyAodroIEeSALvGk0JomMTnSfDBsbMbgHytGv4ISI
|
1460 |
| BacterialTyper/data/available_plasmids_data.txt |
sha256=YmKOX3xTVjP7mQKFQzO12gGH9GOhcZ371U_YdvPAHo0
|
1175 |
| BacterialTyper/data/data_files.py |
sha256=WnJ0RxM5y4XW3-nfQGsl4_cwbK1Jd3qeXcr_tA9Pclo
|
865 |
| BacterialTyper/data/data_files.pyc |
sha256=MdOUUtQkYTyCu12ACdNj4CKdxa57U0fveabLVSxTgPU
|
951 |
| BacterialTyper/data/toDownload.csv |
sha256=PCEJMHtw8IQ1b701lVFurHxXtqA-V1FRNk1z--JljhY
|
923 |
| BacterialTyper/modules/MGE.py |
sha256=UjyXWBx22G1crCXcoFqUXTgCQ6ZonBMQ3coymU58OJs
|
17874 |
| BacterialTyper/modules/__init__.py |
sha256=7DEBH18QmG_aInb-4bFjJr4i51vU7jpDG2P9XjWt0UM
|
314 |
| BacterialTyper/modules/annot.py |
sha256=Ocstk7ksm2k8vsYTbwAK_3Z8iQ3cfYnyT3o623oSx8s
|
11483 |
| BacterialTyper/modules/assemble.py |
sha256=KzzHGuJCxihyxp8UsXZU2I_1A7J-yGGaC2LyR3sQqEM
|
13678 |
| BacterialTyper/modules/citation.py |
sha256=PMz-xYj5f9fLclo6Z9u9gvOwWH3_jkVgE4n40g2or-c
|
5172 |
| BacterialTyper/modules/cluster.py |
sha256=R-YEIY0o3V-WvpOK5ptH_c-8vf6yIQKHNQMXbQN5Nvo
|
14698 |
| BacterialTyper/modules/config.py |
sha256=kpmM0aLQeWIjkIQtPFaz0vMKh1ZOTFyLrfEAfAREd4s
|
8970 |
| BacterialTyper/modules/database.py |
sha256=C0Kh3Gx9GM7a0iSQWIBTVjcpAujiQRkcM0x4_ij8mNc
|
12796 |
| BacterialTyper/modules/help_info.py |
sha256=22VxPsUNbwKftcoo1QLFx_R3fALyYaDS-iuz7nSS714
|
11831 |
| BacterialTyper/modules/ident.py |
sha256=kYYA1n-dYjicRqQt_QDzImYSSOISHZbY6SPdhk-d2jU
|
58224 |
| BacterialTyper/modules/metadata.py |
sha256=LwEGF28Tso-VYHSyb-m2C2ymu9lZYNMEC6UiglaS26U
|
957 |
| BacterialTyper/modules/phylo.py |
sha256=OUz06uqBaCc_Hi5pR0myqNfjUOOJcajEOrnUOET_qGk
|
17769 |
| BacterialTyper/modules/prep.py |
sha256=ANzyqMkbhRUuodf5xOTZ2OtXzGPm6O6gn3AGLwBGxHw
|
11319 |
| BacterialTyper/modules/profile.py |
sha256=_PSCqmTGiO15gSp1t4HOtSl5feVVkh_XT2qGlGLqPCc
|
35050 |
| BacterialTyper/modules/qc.py |
sha256=a-CkP8ssmSviDFRsC8uaI098axWcyk7hBD7cULD2YWw
|
16377 |
| BacterialTyper/modules/report_generation.py |
sha256=Kq4ldrw9ywWkA_GGF2oLseHd2Ti1qiHmwS6Ic3eJaeY
|
17839 |
| BacterialTyper/modules/run.py |
sha256=LEkPawjcbKMBeN0_Xd2s1A8YhmnppbgsRUSlkm1Ope8
|
2483 |
| BacterialTyper/modules/test.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
| BacterialTyper/modules/trim.py |
sha256=PLPj2MVT9AGnqmle-TKb801Lo-4PNwQbMFDJld8AIzE
|
9494 |
| BacterialTyper/modules/version.py |
sha256=YgoHwdWSJDPWt6nupqN7x-6fcxyo-fkja58CRY4Dy9Q
|
2251 |
| BacterialTyper/other_tools/__init__.py |
sha256=sY9mNwxR2WzybXb1xtNJKqy83EgyuQUEnKRnWxOGwu0
|
66 |
| BacterialTyper/other_tools/tools.py |
sha256=h3aVf1iVz-5tSNjBWgVn07cxxr7-ic9HwoyJHkntxrg
|
1661 |
| BacterialTyper/report/__init__.py |
sha256=jTlj3UNLfef7O9eek2DeckiTIoyTEHAce8pTzR5Kr4U
|
105 |
| BacterialTyper/report/get_promoter.py |
sha256=4IAancFpdGRvgIh6WYoeDVJbRZKo3wdAFSMnJEdAfyI
|
3466 |
| BacterialTyper/report/retrieve_genes.py |
sha256=3j8Dq_dZaVIbIouYDHIFjd7eOPwbHbttcLtugxm9st4
|
7005 |
| BacterialTyper/report/Staphylococcus/__init__.py |
sha256=Gz9uIdLufSPaPJzXqa6Hyq-ItHLgdULNrfJ8ec8Nv1M
|
114 |
| BacterialTyper/report/Staphylococcus/agr_typing.py |
sha256=jrNJzvu37qMpg-McutErbBxj0aFCGHJvgGP65uuIiHQ
|
9937 |
| BacterialTyper/report/Staphylococcus/get_sccmec.py |
sha256=plL4_FkOEYVJC0F020oJMtjEq8iGt_I5hw6NwAACqRc
|
5158 |
| BacterialTyper/report/Staphylococcus/get_spa_typing.py |
sha256=jogS2-EnQAkUevIZgLxcwjX1OLKytPEI14JsW6tHA50
|
8376 |
| BacterialTyper/scripts/BUSCO_caller.py |
sha256=vxT5TrYlXeQFdh9khn95NdnUWkwabwOS1-1lYOxhlpM
|
21510 |
| BacterialTyper/scripts/KMA_caller.py |
sha256=_WQZhGnqvdpBTuQU2YcN9cf8TyokM7UDpX0Z1AfYwiA
|
29444 |
| BacterialTyper/scripts/MLST_caller.py |
sha256=g8Q0sszXnzLAQX5b6TQ_uTUxWP7D6fN6mmO5bMa3gBQ
|
4404 |
| BacterialTyper/scripts/__init__.py |
sha256=gUfywhecHLmArnRYIdG6sCGb-8IAiEkMr1OQhjsKFvE
|
615 |
| BacterialTyper/scripts/amrfinder_caller.py |
sha256=VyoV8Cnt0q2lv-vQkkv8P-GpfoX9Is6BqCmBCbI3PSo
|
8218 |
| BacterialTyper/scripts/annotation.py |
sha256=tbQZhRqvE8si6s5hFPIGYRkHIEdUCgUf1Q2XjoBEkPs
|
7162 |
| BacterialTyper/scripts/argnorm_caller.py |
sha256=G6oYzsiw4rPcvFzwqATZ05mcT4-jOMmLC9vPwhmEdng
|
1517 |
| BacterialTyper/scripts/ariba_caller.py |
sha256=FW7o-7Biw7JO3En3J_mZfpM6CcYWe0HBcY-3P0sJM5A
|
28635 |
| BacterialTyper/scripts/assembly_stats_caller.py |
sha256=_52e5DnwLPDaKp93N9ejTH8fPDIqru4B9sjRyQeuX0c
|
3203 |
| BacterialTyper/scripts/bacteriophage.py |
sha256=P4HFP0YrGrvLGckTxYHk12XPSYqWYGBABCP0FUi4N20
|
16179 |
| BacterialTyper/scripts/card_trick_caller.py |
sha256=ZbAbzXzaY3gu8R2w6yFSFUCLU7KcS1BlupVDSs-I8KQ
|
2933 |
| BacterialTyper/scripts/database_generator.py |
sha256=h3uwTp9VLd7HNQrzio4RuPpVj0kjOHkMnvFK0l2GRvY
|
34495 |
| BacterialTyper/scripts/database_user.py |
sha256=Pn9P7U-pNzOuYuKC6z8JkZ-DknAV1MtpAKf4wtWit8k
|
18367 |
| BacterialTyper/scripts/edirect_caller.py |
sha256=dEu9SZX9OKpjdt2C1zGzYWgc9bkxWxyz-lnWgWS8Qg0
|
3248 |
| BacterialTyper/scripts/fastqc_caller.py |
sha256=HTxqiYEXQZBIwFwzJ4Wy57LYAFyAuwVMwe7dW-sL-8E
|
2815 |
| BacterialTyper/scripts/functions.py |
sha256=ZvZyBc025KxJ_0D-Sps32tnYZs1Cf1hT-MbLBrjBlHU
|
18564 |
| BacterialTyper/scripts/genomic_island.py |
sha256=HHg7l3PpVXvH80dtM6I94fzlcpWA7wEKO69fZ3tBWkM
|
4253 |
| BacterialTyper/scripts/get_descendant.py |
sha256=9UnpiqL_pCX23x4tdebXbDv-t9h74FN860VmDW5nClY
|
1578 |
| BacterialTyper/scripts/kraken2_caller.py |
sha256=kkiNO7Nuq8emfLef8vMiCsNcyjk9nyeMYo67js3NHIQ
|
8664 |
| BacterialTyper/scripts/min_hash_caller.py |
sha256=Yir0WpKxbsNQgw-fUByXxqWog0DyT8KlBHcVNSl9AtQ
|
14867 |
| BacterialTyper/scripts/multiQC_report.py |
sha256=l6NRyd31oc8-rdz7MEJxpoWI6nFdvDuvY3FLA8xYGcg
|
6611 |
| BacterialTyper/scripts/phylo_parser.py |
sha256=M7AifjSKjgVoVviG9Z5vv2hb8wWhabr632QD8irYdzw
|
6547 |
| BacterialTyper/scripts/plasmidID_call.py |
sha256=RebfbA2uaWnzMXh-aKP0JjyJj0DYRyUixpiWAEpXRno
|
9499 |
| BacterialTyper/scripts/spades_assembler.py |
sha256=7oRcpq48Fh_p6QSBunpnvs9kewM1fBTgUTYKCdBjvlM
|
17721 |
| BacterialTyper/scripts/trimmomatic_call.py |
sha256=y8vyGoKkLtPDK7sOqXSdFI7KhRkOavW4H6IUUREn8Ls
|
7095 |
| BacterialTyper/scripts/variant_calling.py |
sha256=dmOXKld4iLstQxaq9K3cAaFqgKMg0Anrvit-bu02P-Q
|
4721 |
| BacterialTyper/scripts/virulence_resistance.py |
sha256=HZRPlwt7fYJ_CDIY8bPqoS_1m-7zv5vy-BZ2Ma7t4Bw
|
24071 |
| BacterialTyper-0.6.7.data/scripts/BacterialTyper |
sha256=G6jHY4Q5Ku9ftzovJ34D2i5qjJLfFxoxP3Kn0LwS25U
|
64913 |
| BacterialTyper-0.6.7.dist-info/LICENSE |
sha256=7YGLBmsHQOiI6hXZJF7Shj9u4qUMgXCqBjxCjq1e1Kc
|
1072 |
| BacterialTyper-0.6.7.dist-info/METADATA |
sha256=dq13AxCqrwzL66Hwb4AfyqF1pQUjrPuzhrfpBAmyyRQ
|
4981 |
| BacterialTyper-0.6.7.dist-info/WHEEL |
sha256=OqRkF0eY5GHssMorFjlbTIq072vpHpF60fIQA6lS9xA
|
92 |
| BacterialTyper-0.6.7.dist-info/top_level.txt |
sha256=P7QmD_uw_iM9vug5DhAdZwSnS3e-jTJUDs331X9LFPw
|
15 |
| BacterialTyper-0.6.7.dist-info/RECORD |
— |
— |