Wheelodex » Projects » AltAnalyze3

AltAnalyze3

View on PyPI — Reverse Dependencies (0)

0.1.2 AltAnalyze3-0.1.2-py3-none-any.whl

Wheel Details

Project: AltAnalyze3
Version: 0.1.2
Filename: AltAnalyze3-0.1.2-py3-none-any.whl
Download: [link]
Size: 152453
MD5: ce589ea261e73ed53951b41f4587e83c
SHA256: 1f1cc1dfc30e1142365f2c2b5f09f3190cc25dbc756a6b65080e027ae1d5a7f4
Uploaded: 2024-10-23 02:13:48 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt

METADATA

Metadata-Version: 2.1
Name: AltAnalyze3
Version: 0.1.2
Summary: AltAnalyze3: Advanced RNA-Seq Analysis Workflow
Author: AltAnalyze Development Team
Author-Email: AltAnalyze <altanalyze[at]gmail.com>
Home-Page: https://github.com/SalomonisLab/altanalyze3.git
License: Apache-2.0
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Dist: aiofiles (==24.1.0)
Requires-Dist: anndata (==0.10.9)
Requires-Dist: Bio (==1.7.1)
Requires-Dist: biopython (>=1.84)
Requires-Dist: future (==1.0.0)
Requires-Dist: h5py (==3.10.0)
Requires-Dist: joblib (==1.3.2)
Requires-Dist: matplotlib (==3.6.2)
Requires-Dist: nimfa (==1.4.0)
Requires-Dist: numpy (==1.23.5)
Requires-Dist: pandas (==1.5.2)
Requires-Dist: pysam (==0.22.0)
Requires-Dist: pytest (==8.3.3)
Requires-Dist: requests (==2.32.3)
Requires-Dist: scanpy (==1.10.3)
Requires-Dist: scikit-learn (==1.3.2)
Requires-Dist: scipy (==1.14.1)
Requires-Dist: setuptools (==68.2.2)
Requires-Dist: statsmodels (==0.14.0)
Requires-Dist: tqdm (==4.62.3)
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 2581 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.41.2)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
AltAnalyze3-0.1.2.data/scripts/altanalyze3 sha256=BdiX1cZpklyD45-BiRLFRkQpYb3wwCirRgUtx3gyH9w 314
altanalyze3/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
altanalyze3/bin/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
altanalyze3/bin/altanalyze3 sha256=0h6lty8Hry8Q4W_-AslF26wxDa5k4LAW-FbSmeC8Kwk 328
altanalyze3/components/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
altanalyze3/components/aggregate/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
altanalyze3/components/aggregate/main.py sha256=8DjNT6rguiPpsuR2f76pDWPhI-Vgdt_y_kmT5YqW95I 21049
altanalyze3/components/annotation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
altanalyze3/components/annotation/ensembl_biomart.py sha256=mUTzXvFRszzwmNaFafr17NhTUDO8YE6kHOoLkESvZBA 17965
altanalyze3/components/annotation/junction_isoform.py sha256=4bysJrerKjdMPpk_7X44d_CC1At43LOHXO8rZsbkzQE 8279
altanalyze3/components/gene_model/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
altanalyze3/components/gene_model/gene_model.py sha256=-ndVPlHTPz3fmyNSS7rQUT_UOVa4ewfo6vOGbYhmxnI 9005
altanalyze3/components/intron_count/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
altanalyze3/components/intron_count/main.py sha256=D1rRDROMFMOaTDUEa6x5r2QVKtCp3Q0P1cW0kQDwB4Y 18059
altanalyze3/components/junction_count/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
altanalyze3/components/junction_count/main.py sha256=VlbkDR9t44DJA4UUmICwyohKbH8LXhIkphM7_0BmJfA 2287
altanalyze3/components/long_read/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
altanalyze3/components/long_read/comparisons.py sha256=X7mUD9wxEQpTBOJWiALJimh_JPP2rVfdKYveFuwGljI 8266
altanalyze3/components/long_read/gff_process.py sha256=G0x2C5UtNs09Mwry4YDMJ402u5fW7c9zQBEBQZCxuWE 45504
altanalyze3/components/long_read/isoform_automate.py sha256=N3A-HnRTl4tDLFbKvrFp87Do-3B2HtqrXwSKYZHvT_c 10133
altanalyze3/components/long_read/isoform_junctions.py sha256=WctUvdy3e6wAcOsrlhjnySKHeOiKw4Q0DYfYbeb2oHQ 11587
altanalyze3/components/long_read/isoform_junctions_chunk.py sha256=RG36WM_Qom2Xnbs8bUVs0rM48dqMKQQfSAODkziPLbs 12239
altanalyze3/components/long_read/isoform_matrix.py sha256=mu47ZEHRTgX_DSzpsZM3DWIwAUhJZUelQWtinhEno24 24038
altanalyze3/components/long_read/isoform_ratios.py sha256=WvC766DV03CnF4WAuo19Eq_B8-vWUZ_1XvydIuJZyuI 7548
altanalyze3/components/long_read/isoform_snv.py sha256=53XtClQq_cQTI1Z9294eGqcDqppSvfOUKJp-BR3g7IU 11758
altanalyze3/components/long_read/isoform_translation.py sha256=h_yRXjjgIsO6NvENHm5o5ymG3iGxevD-iKuGPYCcmws 15149
altanalyze3/components/oncosplice/PCAbasedFeatureSelection.py sha256=StxmvpX-BDqq3O9_fkiz7ZcFw4ZmkAX2Kjxi0IgrqmU 3450
altanalyze3/components/oncosplice/RoundWrapper.py sha256=2DhTqvFRemtteQ63uKMKNyOsJ2KcHyrqNPopN3wT-LM 10170
altanalyze3/components/oncosplice/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
altanalyze3/components/oncosplice/correlationDepletion.py sha256=fEGDNdyHB2UOQf1r8_tGT2NvNmvoMm2YjiMPXMj0eKc 3269
altanalyze3/components/oncosplice/determineNMFRank.py sha256=acO22_WR2uFmij3xoLM6qUoeatjCAbbCkZ0UAVES9Ug 1878
altanalyze3/components/oncosplice/linearSVM.py sha256=4TzpWGNygH8JBhv4-d1gkhHNyIwjkUXrFQCq9n6uxTU 3770
altanalyze3/components/oncosplice/main.py sha256=jzLIaaG4qTqUjedYLwkxzZqhY7FhIrpbsjyertrGEGA 16749
altanalyze3/components/oncosplice/medianImpute.py sha256=efwTAL2RIXv4lC9ApSYxZYJDjr0IrbHZ2eN94pMHjyk 762
altanalyze3/components/oncosplice/metadataAnalysis.py sha256=b-pBBSIuMhWN5x5Hp3RO9IMrV2X6InqBOngQmlwtvp4 6988
altanalyze3/components/oncosplice/preprocess.py sha256=DChDQWWsgUhRZ98WMof3LmD96g-3bl-JlT0l4NDmyVI 3139
altanalyze3/components/oncosplice/removeRedundantSplicingEvents.py sha256=SkhZiNdgSc-B0N6ubJrUGWAODRmN7yednhzWlPFD8OU 6107
altanalyze3/components/oncosplice/runNMF.py sha256=s5qCvml4HMt-s-w_1Vafyk_E45Z3Cct1r0fmUyIonJQ 5667
altanalyze3/components/oncosplice/visualizations.py sha256=ahsYP97pQYlvrrywSW9Kj2ocLh_zZh3vJKw7VRCHUV4 1869
altanalyze3/components/psi/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
altanalyze3/components/psi/main.py sha256=ORo9kG9O8YA_KFqzYszGXfUyEw_y1bXS7E88J7xoXLw 10285
altanalyze3/components/psi/main_backup.py sha256=WNy5GVpo6UfmpXZV5ZYQ_f4Gj4VFId1-rlnX4J4BHEQ 8626
altanalyze3/components/psi/psi_single.py sha256=vCuGYQxIde_DQ9vd0hNIloTuQWu8WLgRKM93SA-e0pw 7718
altanalyze3/components/sparse/sparsify.py sha256=rY4D1ESqiMv4DNwXmp_3ejlKBDHuWfxqr7HNW4R7zLY 1593
altanalyze3/components/tests/BM_aging_MDS.py sha256=HoEegMAQTElELVjGzSZqTGpAytduIHjKV1-tU05qSjo 60524
altanalyze3/components/tests/BM_automated.py sha256=t-b7vMy9walWEie9yFiLY3wZJfElHnydYPSq_l7LNN4 2853
altanalyze3/components/tests/JointProcessingScript.py sha256=mtR5uBo1LlUFqvHHzURnmHnnAyaeRCC2rDIRhTfV5OA 77698
altanalyze3/components/tests/Ovarian.py sha256=eM8NG15HI-Cmga-j4PLgJFrZGNZoyMj90a3u6w139RA 1560
altanalyze3/components/udon/classificationFunctions.py sha256=b0IULQxd3x2ESu6VIIQU6YIdKYTNrMivgqYtElMLvlI 5610
altanalyze3/components/udon/clustering_wrapper.py sha256=4IiOCkmkC_-eRCNisV70QnPV44BDOMFGtfm1_8dJsAU 6988
altanalyze3/components/udon/determine_controls.py sha256=SNZpcDyIT0m0XMTzo74jVoJqZmdHvzL28nEp7L8slNQ 7038
altanalyze3/components/udon/enrichment_pathwaycommons.py sha256=dX0OBMEi8isTPaYoeWeT9g79fBVXzZgtRGM95zEFWI4 5904
altanalyze3/components/udon/feature_selection.py sha256=RnU5mOaIHg1YTNSz6UYr2dLDbeeAe2C6uv8ZRJzdbAc 8747
altanalyze3/components/udon/linearSVM.py sha256=4buWPhcVbhrpHvTAuDElEAxncSuM0QXSYZHX5gFgFJU 2221
altanalyze3/components/udon/markerFinder.py sha256=ufjzfqps9ZBBrIq0YDNQVovwjhRB-2pMYv7rKwUIdpw 5695
altanalyze3/components/udon/nmf.py sha256=XNVj-xXqDVUpuhhTkX2Hohk2MgPuy63DXsyUNlqzhkg 3365
altanalyze3/components/udon/pre_process.py sha256=qInv2OdPr0mFZjzHX_6JX-jFBtnQrD9MGM00bLMQCOc 8848
altanalyze3/components/udon/visualizations.py sha256=-hfuqTiOomMMbQzzY1ZuHvcI33sjORZH_kSnf65pzcE 16150
altanalyze3/utilities/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
altanalyze3/utilities/constants.py sha256=oSR5osDrHFEyO7QaXjI4XzDx8EURJEGHtPOHlJoZHjY 3194
altanalyze3/utilities/helpers.py sha256=n-uxaQD0qRkJeCHUp3q5_ztrZlSIy-BV1p5fUgBdVrY 1125
altanalyze3/utilities/io.py sha256=EcFxbkvDBprcgXp2rJ3km4FJBtRYxm9Re0q5SkU3h8I 6383
altanalyze3/utilities/logger.py sha256=ka9p9yRvNJV_BWoPVFzkUQHitzcsdnESLSHFsvYif7w 392
altanalyze3/utilities/parser.py sha256=oNuGVmRcnnFjQXlsYeKM2_nk-hJhvIHOU_2lntkTKwA 13253
doc/conf.py sha256=OTwPyL6gF6ccsDdykYlyN9KCMP-yw1yuLk7WkT5qiLA 2150
docs/conf.py sha256=9zmX3rPXLgBIwmXGBXUBx7oNRfiYWG7eBnG3E6UcTsg 2175
tests/unit_tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/unit_tests/test_data.py sha256=TzjzoOdfPbMHrX1fg9WVDiktgIUdHGht11vE55Le6-k 1533
tests/unit_tests/test_helpers.py sha256=VzCI5mpEIPMjR-NhJSt0ryvX3lSVrTre5p6y5Y4vapI 718
tests/unit_tests/test_intron_count.py sha256=drYZkzV-8Y_Fs2xVZFR7LwFHUESJZi7HL36D6nitG2s 4095
tests/unit_tests/test_io.py sha256=nfIADbxvh9Ux8z3ufu0KCUJ60MgtU8EOlIQL4A-hhsc 3028
tests/unit_tests/test_junction_count.py sha256=gVtUmdPvcboH-OT0MWrJ_qenc08PBqgbGLIaZ-iSfho 3733
tests/unit_tests/test_parser.py sha256=lzK5DkLfRw_OFLybkoDGv1IGPmSl8bRVUGTPNTaeB9Y 1804
AltAnalyze3-0.1.2.dist-info/LICENSE sha256=t0RgwIhyix-S-BEafaVKfgRmeeqv0BpK7dECD1WDuc4 11345
AltAnalyze3-0.1.2.dist-info/METADATA sha256=VC4YKpU8B_YoEukVcoS7vEsTEI_jP51QGuzpw5acBNU 3800
AltAnalyze3-0.1.2.dist-info/WHEEL sha256=yQN5g4mg4AybRjkgi-9yy4iQEFibGQmlz78Pik5Or-A 92
AltAnalyze3-0.1.2.dist-info/top_level.txt sha256=bPNfsXyj4aTux93YmbRhhCJZIZzvfL0sG61sdmsZWlE 37
AltAnalyze3-0.1.2.dist-info/RECORD — —

top_level.txt

altanalyze3
cwls
doc
docs
tests
wdls