alphaquant

View on PyPIReverse Dependencies (0)

0.1.7.dev0 alphaquant-0.1.7.dev0-py3-none-any.whl

Wheel Details

Project: alphaquant
Version: 0.1.7.dev0
Filename: alphaquant-0.1.7.dev0-py3-none-any.whl
Download: [link]
Size: 1038162
MD5: 40453561aff0442a3f259eaa7d9f4505
SHA256: 13903fe0c54c3d5466ac40d2a11cf023c8624d41d0327dcea3c3ccd3e30c681d
Uploaded: 2025-03-11 19:56:39 +0000

dist-info

METADATA

Metadata-Version: 2.2
Name: alphaquant
Version: 0.1.7.dev0
Summary: An open-source Python package of the AlphaPept ecosystem
Author-Email: Mann Labs <opensource[at]alphapept.com>
Project-Url: Repository, https://github.com/MannLabs/alphaquant
Project-Url: Issues, https://github.com/MannLabs/alphaquant/issues
Project-Url: Mann Labs Homepage, https://www.biochem.mpg.de/mann
Keywords: LFQ,label-free quantification,mass spectrometry,proteomics,bioinformatics,AlphaPept,AlphaPept ecosystem
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.9
Requires-Dist: numpy
Requires-Dist: numba
Requires-Dist: statsmodels
Requires-Dist: pandas
Requires-Dist: scipy
Requires-Dist: matplotlib
Requires-Dist: seaborn
Requires-Dist: anytree
Requires-Dist: graphviz
Requires-Dist: click
Requires-Dist: lmfit
Requires-Dist: dask
Requires-Dist: multiprocess
Requires-Dist: pyfasta
Requires-Dist: openpyxl
Requires-Dist: scikit-learn
Requires-Dist: alphabase
Requires-Dist: alphamap
Requires-Dist: pyarrow
Requires-Dist: numpy (==1.26.4); extra == "stable"
Requires-Dist: numba (==0.61.0); extra == "stable"
Requires-Dist: statsmodels (==0.14.4); extra == "stable"
Requires-Dist: pandas (==2.2.3); extra == "stable"
Requires-Dist: scipy (==1.15.1); extra == "stable"
Requires-Dist: matplotlib (==3.10.0); extra == "stable"
Requires-Dist: seaborn (==0.13.2); extra == "stable"
Requires-Dist: anytree (==2.12.1); extra == "stable"
Requires-Dist: graphviz (==0.20.3); extra == "stable"
Requires-Dist: click (==8.1.8); extra == "stable"
Requires-Dist: lmfit (==1.3.2); extra == "stable"
Requires-Dist: dask (==2025.1.0); extra == "stable"
Requires-Dist: multiprocess (==0.70.17); extra == "stable"
Requires-Dist: pyfasta (==0.5.2); extra == "stable"
Requires-Dist: openpyxl (==3.1.5); extra == "stable"
Requires-Dist: scikit-learn (==1.6.1); extra == "stable"
Requires-Dist: alphamap (==0.2.0); extra == "stable"
Requires-Dist: alphabase (==1.5.0); extra == "stable"
Requires-Dist: pyarrow (==19.0.0); extra == "stable"
Requires-Dist: plotly; extra == "gui"
Requires-Dist: bokeh; extra == "gui"
Requires-Dist: panel; extra == "gui"
Requires-Dist: plotly (==5.24.1); extra == "gui-stable"
Requires-Dist: bokeh (==3.6.2); extra == "gui-stable"
Requires-Dist: panel (==1.6.0); extra == "gui-stable"
Requires-Dist: pytest; extra == "tests"
Requires-Dist: nbmake; extra == "tests"
Requires-Dist: pytest-cov; extra == "tests"
Requires-Dist: bump-my-version; extra == "development"
Requires-Dist: matplotlib-venn; extra == "development"
Requires-Dist: ipykernel; extra == "development"
Requires-Dist: nbformat; extra == "development"
Requires-Dist: progressbar; extra == "development"
Requires-Dist: pytest; extra == "development"
Requires-Dist: nbmake; extra == "development"
Requires-Dist: pytest-cov; extra == "development"
Provides-Extra: stable
Provides-Extra: gui
Provides-Extra: gui-stable
Provides-Extra: tests
Provides-Extra: development
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 16133 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (76.0.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
alphaquant/__init__.py sha256=52Gk2rM_zm_HxLqe-9xI43VMqEOSopM0tHFGrVorpvc 1458
alphaquant/run_pipeline.py sha256=BzLN9aVyZQhCJYY3tgG4QqgUOP9bqAgwrVoD9_g6apQ 15975
alphaquant/benchm/__init__.py sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs 1
alphaquant/benchm/benchmarking.py sha256=fSp-0QLouKVwXAlBSDBIJK_UaNmBzwLI9SIzp4sNNWA 60759
alphaquant/benchm/ratios.py sha256=zPXr2f6c4QuPZbX42kN4dpV-QnsPm_himtrm-a6wDIU 10466
alphaquant/benchm/sensitivity.py sha256=gkumEgDUZ5ZQiCnObpZlXGXwZjMsaBZwOU_ZHczo7Xc 8713
alphaquant/classify/__init__.py sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs 1
alphaquant/classify/classification_utils.py sha256=tkSc8w37VKqJjpv0XUBYqBVxD6dpsaeLcESFySaGWd8 4204
alphaquant/classify/classify_fragments.py sha256=QA8YVCkFgNA9pwZnS3hKbQrslxMgG3cmpNh7AJw7NLA 15626
alphaquant/classify/classify_precursors.py sha256=vdElToiqEN967GjqVjwAonYCb_AlqH19c2YkxaAkEQU 10513
alphaquant/classify/ml_info_table.py sha256=xG_K2CO0fILh3yX4RNnLiUrdiSFSsuUTMaXiy0gdWdc 3825
alphaquant/classify/training_functions.py sha256=qpaXXIz-AqM0k7ctEsBUWeTSuw96rRH6I_USi4_UONQ 12686
alphaquant/cluster/__init__.py sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs 1
alphaquant/cluster/cluster_ions.py sha256=2oK5PBNSrI69yLqhrTDp9_O69spknxUApE4kflTrJvU 15549
alphaquant/cluster/cluster_missingval.py sha256=4BLzaO1jfkmN_vyItLDDr0j33PQpgDQDTQIRmDRA7qY 11080
alphaquant/cluster/cluster_sorting.py sha256=1wmA9VGsObmRLWiLfwCrShaQgHrTtVt01mYYeWmmOP8 1887
alphaquant/cluster/cluster_utils.py sha256=3TQDRldoZNin4pHcXn58ihrPPF0rJoA6zJSEikdnLx4 19612
alphaquant/cluster/ml_reorder.py sha256=q3FddZ1HUouk_zZK_epBk7uoJZN1k-eNp7trWQ76pvE 6831
alphaquant/cluster/outlier_scoring.py sha256=UA0toZU9M4H-vADiPUFUOyaHMmwvPpaQoZty5wukZ6Q 21307
alphaquant/cluster/proteoform_statistics.py sha256=k-d7NlmT0shNSKjyet8i1RptO3JF-XWQoGEfwpF4jCE 4102
alphaquant/config/__init__.py sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs 1
alphaquant/config/config.py sha256=-myc_8VKZuWZM8EEmQLRlO_4HvqgD1e9qvkEtXNZaEM 1289
alphaquant/config/download_links_for_testfiles_quicktest.yaml sha256=FJ6JHUuW03RJPxnpTS2eiNso_V6uwrYwdDHJAJ9WJZA 837
alphaquant/config/download_links_for_testfiles_selected.yaml sha256=w3J0gnEfVZSQT_FlB23hfUJABoweI9DoYoPG-CtxYi0 476
alphaquant/config/quant_reader_config.yaml sha256=f87g1LJeE0OZsC7MAKES9-QYMc4Cv_Tf6uh9U3Nx0Jc 25924
alphaquant/config/quant_reader_config_lightweight.yaml sha256=b3PXGJIP__XlosLjomNj4wxYK-U7h62eqxxfmskteDc 9291
alphaquant/config/spectronaut_tableconfig_fragion.rs sha256=_4sU3uZx0fKGUMxBqKM_fr4HMl_2OFLx_Wa9hbkoo1o 26032
alphaquant/config/spectronaut_tableconfig_precursor.rs sha256=ReJDUX1XSHvMxeYGfLNz2u0ngOfmV0BrruO29W_e5FY 26048
alphaquant/config/spectronaut_tableconfig_ptm_fragion.rs sha256=sg9Z-z4c5-6HvZ8KJmA8Lh6et8eqWygfPM8wtDWKTTI 26000
alphaquant/config/variables.py sha256=_-tzOrAj7P4uwnidYPmvqftNc9WtkZ5RwC5pWNpx5yo 944
alphaquant/diffquant/__init__.py sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs 1
alphaquant/diffquant/background_distributions.py sha256=cpAdvmec3Mvx53lgh67f00Dq5Hc_OcfjyaZLOPRiym4 17070
alphaquant/diffquant/condpair_analysis.py sha256=fKAj8XMJ0pqfOU6tdDfELYYJPSYG6VqedRBJK2LgHpY 12821
alphaquant/diffquant/diff_analysis.py sha256=6My5mEG1RltL5p1LUIiZQsYrS1pb6gJMtgdOkcaxMJM 6186
alphaquant/diffquant/diffutils.py sha256=jCi4uFFiYzNafryU3_LRGw0z7sCASt46Zwb88j8Jxi0 12481
alphaquant/diffquant/doublediff_analysis.py sha256=ebS7TAB4DpTkXRnas7KNY-MNpUFEOYdk8N5DvvzIqj0 8229
alphaquant/multicond/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
alphaquant/multicond/diffresults_handling.py sha256=3DP_tQTdJh-nnQXLGH8snI3A3j--mYYq38Dm6ZdrlYk 4649
alphaquant/multicond/median_condition_analysis.py sha256=RwNiwlyMOg1pzNcp--Uc_w8eSCOCp4oEfe5ALxeG0w8 12760
alphaquant/multicond/median_condition_creation.py sha256=Z8Odzhi-yXDfw7Ii3KHMkY3yjAA5XnYJ3R-dwulkjNc 9039
alphaquant/multicond/multicond_ptmnorm.py sha256=sDQvc-LWyIHMLMam4HsSI1VbJRL6vzFQlfucNl1z5Io 1745
alphaquant/multicond/multicond_utils.py sha256=VSDqbwxqSuTlSdxUqQ2vixtqIT9nTTvQqkbmlDlLJKw 762
alphaquant/norm/__init__.py sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs 1
alphaquant/norm/normalization.py sha256=KyOq8oyDCpDA42ptw1mTiQZrZixvfH4fGqqEuNUoG4M 15006
alphaquant/plotting/__init__.py sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs 1
alphaquant/plotting/alphamapviz.py sha256=LlWT05jPq2LGg-7pWT4lq4OGoPttTA0creRds14KBj8 8304
alphaquant/plotting/base_functions.py sha256=vIZTqNgqJoaXphAGTi9DYxoZYEfk8yauCOAbFO2Ej9s 53421
alphaquant/plotting/classify.py sha256=2UQmK956tDxD82QOBh6XXl9gA_JEoFSc6ehdImwqivI 4285
alphaquant/plotting/colors.py sha256=oZ7ECW5og6CE8_Fuv4rCfg_vuJYkZ-CEXbzmcxsGI5Y 3888
alphaquant/plotting/fcviz.py sha256=d8EbyzCotDa-LsI1ulyI9nI_Ivh32G-Zp9ZvtiVTqgs 32976
alphaquant/plotting/fcviz_medianref.py sha256=u3fK7cLUOQ1Z6-6Tb3T5HZ4qD_VeAiX0XnBGNPiNcYc 6744
alphaquant/plotting/multicond.py sha256=2BIsreZlZ5EEbK-v0cNLE0l7XAmoDT2KSkjCdtWbq_M 1615
alphaquant/plotting/pairwise.py sha256=FGJoY8rEUZIzk7JTos2_OtrftHPGB3D5BXl7d0si5-g 6813
alphaquant/plotting/phospho_vs_native.py sha256=cP3MlMfpCTDG5L7G9EvMjhjym-SfziU0FKImy7DjAhE 2675
alphaquant/plotting/tree_and_fc_viz.py sha256=VRW2e9atzGUVj6aM1oqXdLbHcm9PkYHJMNdKdfQot2M 2070
alphaquant/plotting/treeutils.py sha256=OjcftC9OFPUppGxYwGiTJVwa5IdGRftVH--ufpEO4Wo 2104
alphaquant/plotting/treeviz.py sha256=m_svzkbqWVbDejXuKK8-GFjrxpAbKAcnNKgS--Lpy1M 7168
alphaquant/ptm/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
alphaquant/ptm/phospho_inference.py sha256=oZSJXEAs6-BdRP5z-4mkFtYOaTJ8njoqwBf-XVe-VA8 1252
alphaquant/ptm/protein_ptm_normalization.py sha256=lA4w7O3S4wzOKI7uL-pVSolawEIqgeSl36D-_wbOAms 15034
alphaquant/ptm/ptmsite_mapping.py sha256=lxYy7qrf4acRDoPZUwfYQglzqnb9-PjEfCiFJiS-zqg 34046
alphaquant/resources/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
alphaquant/resources/database_loader.py sha256=KYhD6RYUOjKjh1me3WmB1s8pVBe3w3-hbqODt0H1szk 4535
alphaquant/resources/docs/Empty_manual.pdf sha256=1niQPCFTvEKc7nzqUbtG9n53E1n3kUGus1aeezJlyxc 14186
alphaquant/resources/img/github.png sha256=pG5XHILKZPtW5jfADMGWxzQ-i9WDiLPf1yDBFlfpivs 17898
alphaquant/resources/img/max-planck-gesellschaft.jpg sha256=vF9kDW0G0OJ_WME1176L7umDAAnfl_DvCC0MeEfbths 108120
alphaquant/resources/img/mpi_logo.png sha256=RaHIYPCsk4Ct-UeHc-1Uy0BnoKDEdyogzzivsWBSC9k 1317924
alphaquant/resources/img/ms_pipeline_visualization.png sha256=sGfSNBC2AohAtRyTfn6QLB-u8U__Z8EmpdmylSqzdBA 522703
alphaquant/resources/style/dashboard_style.css sha256=4D8sRWnqrus0Q1Ia3XOTwBq4nD4xl8hZABiz-oTvEkE 3401
alphaquant/tables/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
alphaquant/tables/alphadia_reader.py sha256=gPZajFti-gAJB3nugLNRe_nSDhedsZDOIRUKNLDqhmE 4519
alphaquant/tables/diffquant_table.py sha256=Nq8Zi1aZN9D69jfK-OQ4w3qg4OYK4b1Jgck3WZllONs 6058
alphaquant/tables/misctables.py sha256=L4Whazh7Dq4owKiL989ggQn7-y4XHRoHrz6BZVzsM4w 3332
alphaquant/tables/proteoformtable.py sha256=_tuEgnYVG2PXqKpverAxHyrRkauF4rztJMvdNQQC2Rs 6738
alphaquant/tables/tableutils.py sha256=IIWGc-unhjbsrZp2evp5abg_hxy7CfnhzHawDLBx2Us 1722
alphaquant/ui/cli.py sha256=_VaMb-Xh7DjEKnqsUmq8LqoAJG8RjpsW9fEs-B09BJc 662
alphaquant/ui/dashboad_parts_plots_basic.py sha256=tSFdDXT84XSOM0TQcdZ_ohthqmI3rZjdIZE7JG4Iyus 12777
alphaquant/ui/dashboard_parts_plots_proteoforms.py sha256=AZOx5ANc8QbdMo5RjwSORIs8IPn2FVntFc7JsQGjbjQ 16402
alphaquant/ui/dashboard_parts_run_pipeline.py sha256=E5-rliG9Je2y8XZOB9RMFyC6E_tOppONg-RgIDiEcjw 45647
alphaquant/ui/gui.py sha256=wGflUgT-ZVV5cZ4EGakW1fxHn-syDscpywvkBcJoxfc 9294
alphaquant/ui/gui_textfields.py sha256=0E-pUy64oUG-yXrmGs_-OCkVWOQD1zj1VylBmw1z9Ts 11649
alphaquant/utils/benchmark_utils.py sha256=6co5D7Wb0pvGCdFNmHUudFXgrS_7Y_P884Q59feGQmg 795
alphaquant/utils/diffquant_utils.py sha256=oFPKRpp1FeF3n4VM34bzAMoeyWHkfsvsq-PM2HtYwY8 626
alphaquant/utils/proteoform_utils.py sha256=7bwq7xwIFwzo19_85E4LHLdOWVl2YuI0hy_r5K3afqw 1292
alphaquant/utils/reader_utils.py sha256=m9MdOrJlAOt_wwvQvowNMsPHtiA_ylUGAMbZkGns47Y 1483
alphaquant/utils/utils.py sha256=rR9hLEoXzfoq-IblmpjNQt_Sv5RiudibucAosBXTrHg 3209
release/pyinstaller/alphaquant_pyinstaller.py sha256=Erks4DfkvDvrbCJLaZsOA4kgYARVxa38gEIBxXjaHck 421
requirements/requirements.txt sha256=LEQ6QpHN33xoB_QUUEDPzy0Q30TA0RxEhhsApX_Q4Y4 307
requirements/requirements_development.txt sha256=r4XpFzi0uZeDlcaZ4MXHtF0D6QpfZtF-Lh7FbOwcGus 63
requirements/requirements_gui.txt sha256=NNyVLM-Ln-cr4iMsn_h-cvMRohjevhqjMxJWDgbj_ac 41
requirements/requirements_gui_loose.txt sha256=opPbZbRd0YLr18Ymm1nm6Q1tUUt_CZYnlwoEY50lCYE 19
requirements/requirements_loose.txt sha256=fF1n6iRGFk6uW1tNV0dO2VCaBp8DSx2wkfMt5N8anR0 160
requirements/requirements_tests.txt sha256=ElDUnGAPmw2feQpPaZF-NamVFELvG_ffDsnI1Bw-AFs 25
tests/download_testfiles.py sha256=phSjh3Q-z-6LRU2re7OUyXhez9Nj1Rrq9tf6Lg4hpfQ 824
tests/pytest/test_requirements.py sha256=FgDtAlAz4Abu5ShXX9rrxYIHBUi2tlZi4ucSrBQdExk 4765
tests/unit_tests/test_background_distributions.py sha256=1Qo4ewCiZrXqNBUXPEA3zJu6AJp_nLLZPO1GY3iiOIw 1018
tests/unit_tests/test_classify_precursors.py sha256=tVpTZhG-l6LoaoVyn35qM_2pRuRySGpnR8in-0vVwqw 3669
tests/unit_tests/test_cluster_ions.py sha256=neOZzasGpVwJSN7q0JGtGGAIJ4dUyGuos0s7pIjfTYo 10074
tests/unit_tests/test_clusterutils.py sha256=TXy3rzNkCh1hQ3-lhIMgzisbC8d27GCI06ZSOtIMOIk 5555
tests/unit_tests/test_diff_analysis.py sha256=bsWXJoLtpJcSPIlKHpD_QWVoxaZGKvNZUOsoDxmACvA 1671
tests/unit_tests/test_diff_condpair_analysis.py sha256=tw7Nee_Mjw_H_wB1PjdNyHs835CcNp00eqqdvoCPZds 3338
tests/unit_tests/test_doublediff_analysis.py sha256=90FCNQEc4lbbjvULerzw6ig-82vxh9KpU0J6TEibUds 10850
tests/unit_tests/test_median_condition_creation.py sha256=Ke3NKyVdxnWdzLDNhkjIa0cVmpWKY_M-JXATIXmC28Q 8662
tests/unit_tests/test_median_conditon_analysis.py sha256=7lJXG8SI_go3Ao3syHSdlEzAW1fLigUABN9nOGuip2s 8244
tests/unit_tests/test_ml_reorder.py sha256=4el4XDMv7x1EUUE50Pta_wfqAK_ryhTV8DNpa5jmGKE 931
tests/unit_tests/test_normalization.py sha256=sT2Cywgx5fq7PwSAc-Khe5x8VtC1G7e8-Tib11NTrCw 1180
tests/unit_tests/test_protein_ptm_normalization.py sha256=pSHsNn8UlJe9g94_VLWb-qYGQ0IBYuRUIvx9gaoyMrI 10315
tests/unit_tests/test_proteoform_statistics.py sha256=W8SX7rsYF0n6-NBOED3r_2OLoBGkOTJRvM0ev8a_NtA 4350
tests/unit_tests/test_ptmsite_mapping.py sha256=D44MY6goCC-R_2G-LZsJ-YbSbo_-fm0eAFgbDhnCyLo 6237
tests/unit_tests/test_tableutils.py sha256=10bhTlGKiNlbuQ7AqNl4R5SuBgGwuRQxDCrr2y3ncj8 4925
tests/unit_tests/test_training_functions.py sha256=PXYVDZqRiVkO3xAPRKAlm7-d3e7Cxj6nGF30PjnOUy0 4178
alphaquant-0.1.7.dev0.dist-info/LICENSE sha256=T-XXKNKoRCZuc8eSmvNktVWWMV4K5qfcEInUaJtYyG0 11355
alphaquant-0.1.7.dev0.dist-info/METADATA sha256=VREYDPBvEX4kKNRriA46EovDYGyjL2hDVtXeZF8-mXg 19341
alphaquant-0.1.7.dev0.dist-info/WHEEL sha256=52BFRY2Up02UkjOa29eZOS2VxUrpPORXg1pkohGGUS8 91
alphaquant-0.1.7.dev0.dist-info/entry_points.txt sha256=N1Ka7vFgkfFyptjkIDiV9my_9wczgys0ZxGi6x7rzWY 53
alphaquant-0.1.7.dev0.dist-info/top_level.txt sha256=uAorciZTS0xmNFO_HNiUC_4ON7oTL6fYQ1UKfqF73JQ 38
alphaquant-0.1.7.dev0.dist-info/RECORD

top_level.txt

alphaquant
release
requirements
tests

entry_points.txt

alphaquant = alphaquant.ui.cli:run