alphafold-colabfold

View on PyPIReverse Dependencies (2)

2.3.7 alphafold_colabfold-2.3.7-py3-none-any.whl

Wheel Details

Project: alphafold-colabfold
Version: 2.3.7
Filename: alphafold_colabfold-2.3.7-py3-none-any.whl
Download: [link]
Size: 242251
MD5: eafda34fd1cdfdce291786f413249411
SHA256: 1bb741e8e5816384c9255950158dd778d6035e307a7384366ae0cde2f5c05c82
Uploaded: 2024-12-04 16:55:13 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: alphafold-colabfold
Version: 2.3.7
Summary: An implementation of the inference pipeline of AlphaFold v2.3.1. This is a completely new model that was entered as AlphaFold2 in CASP14 and published in Nature. This package contains patches for colabfold.
Author: DeepMind
Author-Email: alphafold[at]deepmind.com
Home-Page: https://github.com/sokrypton/alphafold
License: Apache License, Version 2.0
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
Requires-Dist: absl-py
Requires-Dist: biopython
Requires-Dist: chex
Requires-Dist: dm-haiku
Requires-Dist: dm-tree
Requires-Dist: immutabledict
Requires-Dist: jax
Requires-Dist: ml-collections
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: scipy
Description-Content-Type: text/markdown
License-File: LICENSE
[No description]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.3.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
alphafold/__init__.py sha256=gdKF935EQwiq84e_Buy798zKRGHWLbPprZ_kYjk-XYI 663
alphafold/common/__init__.py sha256=FEwAH4F6EcAYy2GDVOf7Z-Us120Bt0ZnsC_AZXpYdOc 655
alphafold/common/confidence.py sha256=NrS235dNIYaySyroLlM5XOSnyYz0aZHPjIoCh8K6ddU 8348
alphafold/common/protein.py sha256=2FxZCYnG6X-C0W3ATmQ1WuQdSMYWCT_JSpFbBgNzPkA 10055
alphafold/common/protein_test.py sha256=ve5ToAsXZWLmnOXt5Y9MT3rJgEF3oez4avJqOwkD3Hc 4594
alphafold/common/residue_constants.py sha256=30r_YcC2g1jpxjFbKiDQE6NLAir34Lu57QHLVw91Dwo 34972
alphafold/common/residue_constants_test.py sha256=S797sC7j2LRVX-qFKmhn0mydgl2-JukM4SvN8ziKb8o 9256
alphafold/common/stereo_chemical_props.txt sha256=JFEIme60kWfP_t7I-kU2Ok0IJ5wMY3pAO0UvfQrAlFE 9119
alphafold/data/__init__.py sha256=n7rW1Joi5Wh-un9XBYu7vnX2JImXylH4PM62Bx22Wx0 634
alphafold/data/feature_processing.py sha256=m6XVyBitzzOBeqM6DZTU-puhIKhEv9fRWOAAl227vlI 8575
alphafold/data/mmcif_parsing.py sha256=p1rFCFujzPsmtqgeY9iE8HOQLZRIOfKjYNRMYgXgGpY 14242
alphafold/data/msa_identifiers.py sha256=dk0CZ8vzfKa19snyV8T5bFkt9RY2wK711kR4eA2u59g 2966
alphafold/data/msa_pairing.py sha256=SqVwp9IVPRz3Uwhy1jCJtl1JoaS10YAXrkhCTd3G9yw 17220
alphafold/data/parsers.py sha256=lnF_8_bej5Q4IHcEiSWFZZa471Xkn5HWHcqMYDMcq7s 21397
alphafold/data/pipeline.py sha256=5ZICptRxl3ejZXKBMvMHKXZXbhK-8PpL0pT1RGS9OP8 10422
alphafold/data/pipeline_multimer.py sha256=FkAuxqzvpgBjqjwGoNC87AOeafJ9W6YvHgNpQHmy9Qo 11126
alphafold/data/templates.py sha256=zWUNIdDr4CYtwsMRZY2rtxAUAgszQs_4EuN6Tf46Dd4 40254
alphafold/data/tools/__init__.py sha256=mbbcOIrdDtdvujXkDPNqZPF-iPW4MN1-ruSIU8kvTDE 639
alphafold/data/tools/hhblits.py sha256=0dTK7VL-n-Bh0BXvPCspUhtxaJSwfijaw8fSfm1Cx_4 5504
alphafold/data/tools/hhsearch.py sha256=cWI172OCsWRzVb6_3OEl41dCYrQv0qxaDzxxsMIRqz4 3601
alphafold/data/tools/hmmbuild.py sha256=LnLU5eQetYruFB9OAHszse1cTBrSx82h6dF1yhpW78M 4576
alphafold/data/tools/hmmsearch.py sha256=X1UEtAuVqH8Fk0bR2gExmA4avV5XYzj7Zz9AC22BUcU 4556
alphafold/data/tools/jackhmmer.py sha256=XV_P-izyj8Qr9Q3_VWwtVAhYsajIEezZgOONzpx1n4w 8386
alphafold/data/tools/kalign.py sha256=YrA-oxe_5j8zgSo8_tRPnMMnGiMwIuZUkFVDf6j5yqk 3387
alphafold/data/tools/utils.py sha256=5k7DkqK-HHBq_uDu5Bz745wrf6Ha2GTDZPvjvjaJz9w 1223
alphafold/model/__init__.py sha256=oje6WcfAoBLpJ3Oeiz6YSyg_aWr0Zt3astkgw6rAh74 617
alphafold/model/all_atom.py sha256=7Bot-GGocuYxnHFMks2C0eeVQFQGJpkXbOLwQW2NA8k 47028
alphafold/model/all_atom_multimer.py sha256=ZX4iw-6RTg5XPDkNjW_78Up2OWjnObF1YEeEHKWObsQ 40135
alphafold/model/all_atom_test.py sha256=lykX95f8R9S42_bpIblR4YqgXgaFwyfsbzG4AgZcOIA 4706
alphafold/model/common_modules.py sha256=vU7WYdnc1ns_C7vJbGQRQtqnkzZNrAjpuzINPIbIfuw 5957
alphafold/model/config.py sha256=OOA-xkJkJWEGyAasmC2I4pvATJtyvRnnObsiP6I9r-c 26715
alphafold/model/data.py sha256=eUOgtZJOFRe8wqDck4x8gDcFCVnOZQkuB8iIOs1M54s 1104
alphafold/model/features.py sha256=XjcjfTV8ONQuXqJzqWbuOdjVjPTyhCTG_WLu12_-je8 3692
alphafold/model/folding.py sha256=_PoZMc5Om30GTffPwIdyJ02YIiXDCxhby4moWXUlsQA 37211
alphafold/model/folding_multimer.py sha256=TtflZIR8F0YWHL3mWhupN3pJxcFGMB5rFmnWdJwRHH4 42484
alphafold/model/layer_stack.py sha256=D9iGNlb6bJsGlWk0Pu2COXfPzIe1o_jhKujlSiRRxNs 9134
alphafold/model/layer_stack_test.py sha256=tg2k0WMA9BFsjkAnrgefey-tLQlVqBTRMjN5tPOmuy4 10315
alphafold/model/lddt.py sha256=IuvUYq0Ek0ifsIE_u1OSxLJsyogHWYyMoSzxDi_6mR0 3505
alphafold/model/lddt_test.py sha256=8VQNh1_3quTYQwtqexezAMz3LXMeDCWVF6i4ztWwirA 2384
alphafold/model/mapping.py sha256=m7K8Wj5BKHa6tiYDOH9-Ue2pOICLnPs7kv0RgKO8J54 7963
alphafold/model/model.py sha256=LFZZoWY-G3lVbe916y2T62sqNqMg_NcdsRpkh4rkizg 7140
alphafold/model/modules.py sha256=qVaYkhWjk2HtXVIJ1EwbUBf9cadS7ip-W7iGVLsFt44 78023
alphafold/model/modules_multimer.py sha256=7h36HTLJVQSgzgemEUhw7kHFk3sc0SkjHBYcc8DNHv4 40285
alphafold/model/prng.py sha256=CeYriywkoqpBcEwLR0v6RcwbWpEhv52IMjInjeJfKjM 1978
alphafold/model/prng_test.py sha256=NkzmVK8HMpwiT4MW9ETrefY8um_VoMtC97mS16N7veY 1250
alphafold/model/quat_affine.py sha256=38HT498OGWbtNh9Nuvn8Wf1SWoRYu3xBh8nHDRaO90k 17388
alphafold/model/quat_affine_test.py sha256=c3AvX2gKlqZFB-25G6m2-ZCPA0hXRydxf95G3JAV3UA 5038
alphafold/model/r3.py sha256=cG3znz8MQRvC19Qi4pYzBfuNPi1NRLAqxQr5kpbfHPg 10935
alphafold/model/utils.py sha256=WrjFn-viUY65ZLWwEk2jy122NoSe6MYlRnKZszC8d1c 6085
alphafold/model/geometry/__init__.py sha256=eVg3bkpMMsipc84vqU1o--k-Tm4NYm14vM_AJCp13kE 1172
alphafold/model/geometry/rigid_matrix_vector.py sha256=5IWpDmr1IZOMn3qjB914uvqt_3gkm2VMISmbopemf8A 4148
alphafold/model/geometry/rotation_matrix.py sha256=i3Ew_X1yDnhXZxKiR0fd-ZBy83izcJaZpNEgC0baG_U 5751
alphafold/model/geometry/struct_of_array.py sha256=TnwUT8u89deVVFtexNs0b2Hi-JpvU92qWF6MUWI0Lsc 7745
alphafold/model/geometry/test_utils.py sha256=JEUDt1KOV-WltP939-bpUQ6wRdefU0PT94iSG4OKZa8 4166
alphafold/model/geometry/utils.py sha256=WoBIk6oO3Cs-HarVD8XqaTxPRPJJby1nBz9MDr8V0pM 853
alphafold/model/geometry/vector.py sha256=1IwvATpHkiYmBJYENMuaWyzXcxJ6zpubh3grbitJVaY 6896
alphafold/model/tf/__init__.py sha256=fuR755zDC2HPcRHeDSn2-l4Vc3x0EUVQLpmP97ZXugU 633
alphafold/model/tf/data_transforms.py sha256=5VGJKOBZWwyFJ1IhzkQBg1FnLLzPeNiH5CDtEEofl80 21428
alphafold/model/tf/input_pipeline.py sha256=jgoCTwLx4VW8IHznV66FKDMdYBo5v8KBdfhp-2vYTFc 5357
alphafold/model/tf/protein_features.py sha256=0QqNfjg5R0TPyRI_-HLdEqh5wpKGb--piUNHlwE8zj4 5051
alphafold/model/tf/protein_features_test.py sha256=SpNlKBfar8i72pmjP66SFOv6iz_tl6qzIXwob1ki93M 1822
alphafold/model/tf/proteins_dataset.py sha256=jJwu-T484j3VEMOUCQ4PVTTcg1nPeRSkgloiaTDYqRg 6344
alphafold/model/tf/shape_helpers.py sha256=C9tGiDTj8CLTYsCNefbyqPRyEgsLZg081hnZdyGoTeE 1415
alphafold/model/tf/shape_helpers_test.py sha256=Kru8lWVbWamNNDoPAbSxZ8bTixcyPBOwsLc_zZv5rG0 1318
alphafold/model/tf/shape_placeholders.py sha256=kUV1ico6FgNuzVG5Z0-MOTNJKEG-gfAuud3PsgbfHIc 812
alphafold/model/tf/utils.py sha256=y-5o4JTdJ8fNXxuvedqkiDr3pQqbovbRkOGDKBgEkJo 1276
alphafold/notebooks/__init__.py sha256=Og-XOKNYfsfXWOxk6yJ9yRPSY0HzgegFtAnvkENEOp0 626
alphafold/notebooks/notebook_utils.py sha256=Hw0J0a3pnYUoqL0KhXyKejcorUb3owm3U5YYHRQtbZI 6736
alphafold/notebooks/notebook_utils_test.py sha256=c6TV3jgkJ_wZvPCoFWDPKAOmShf1BYKgFsoM0wYnuoY 9107
alphafold/relax/__init__.py sha256=C1L4gcGrekha0vxYHSxCxIbFT2tewApGt_PO7Q54bjs 618
alphafold/relax/amber_minimize.py sha256=ooDRFydFb1C0HyYiY_MettRtQDuSjTrDExHdWq5sdlo 19039
alphafold/relax/amber_minimize_test.py sha256=K_Enp4Lm1upgWd2wQ6dibxSqln5EGz6E_rI7v93gRLc 4348
alphafold/relax/cleanup.py sha256=yKPDEZCWFyVDXqbrPes8gbtqgNxVJjWWJlmcmDjoWDQ 4820
alphafold/relax/cleanup_test.py sha256=sIhceOrQOlrSqItKXIq5nU78tIuaZ5_X09L0dKjPUsU 6164
alphafold/relax/relax.py sha256=e0xFPcsXCm6EL2al9ebivMQVGViiTh0jKf7PGmoV-Ho 3288
alphafold/relax/relax_test.py sha256=z2UsFufdjvE_Y7YgrMhZfa9cr_pSzxnOZpz_iwgwdwY 3827
alphafold/relax/utils.py sha256=uMeBMoZT-COQ9PIUYTyecEwFnQLtrMRsPIGw8YevjXQ 2664
alphafold/relax/utils_test.py sha256=rFIVCYB84P7IymG7Hcyipc6ZO_73v52hS_xr0FJ6z1o 1996
alphafold_colabfold-2.3.7.dist-info/LICENSE sha256=z8d0m5b2O9McPEK1xHG_dWgUBT6EfBDz6wA0F7xSPTA 11358
alphafold_colabfold-2.3.7.dist-info/METADATA sha256=FYpCRleP8kaUUOqiUpnxIczbchA35UL9ZkyiES85eZc 1278
alphafold_colabfold-2.3.7.dist-info/WHEEL sha256=P9jw-gEje8ByB7_hXoICnHtVCrEwMQh-630tKvQWehc 91
alphafold_colabfold-2.3.7.dist-info/top_level.txt sha256=4aBpJyIxz2kEO0p_i4MPCEZLWRKQY6haWngINE3cHug 10
alphafold_colabfold-2.3.7.dist-info/RECORD

top_level.txt

alphafold