alphabase

View on PyPIReverse Dependencies (7)

1.4.1 alphabase-1.4.1-py3-none-any.whl

Wheel Details

Project: alphabase
Version: 1.4.1
Filename: alphabase-1.4.1-py3-none-any.whl
Download: [link]
Size: 255745
MD5: 37f574bd48d3651f541bfc4cc2dde7dc
SHA256: 8a639542392eddc0c7eeeb0ab9d238c8e5c17fb52c4bf26924cf8a95ffcf3c34
Uploaded: 2024-11-12 15:27:03 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: alphabase
Version: 1.4.1
Summary: An infrastructure Python package of the AlphaX ecosystem
Author: Mann Labs
Author-Email: jalew188[at]gmail.com
Home-Page: https://github.com/MannLabs/alphabase
Project-Url: Mann Labs at MPIB, https://www.biochem.mpg.de/mann
Project-Url: Mann Labs at CPR, https://www.cpr.ku.dk/research/proteomics/mann/
Project-Url: GitHub, https://github.com/MannLabs/alphabase
Project-Url: Docs, https://alphabase.readthedocs.io/en/latest/
Project-Url: PyPi, https://pypi.org/project/alphabase/
License: Apache
Keywords: bioinformatics,software,AlphaX ecosystem
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.8
Requires-Dist: numba
Requires-Dist: numpy
Requires-Dist: pyyaml
Requires-Dist: pandas
Requires-Dist: h5py
Requires-Dist: contextlib2
Requires-Dist: xxhash
Requires-Dist: biopython
Requires-Dist: psutil
Requires-Dist: tqdm
Requires-Dist: scikit-learn
Requires-Dist: regex
Requires-Dist: dask
Requires-Dist: dask-expr
Requires-Dist: pyahocorasick
Requires-Dist: pyteomics
Requires-Dist: lxml
Requires-Dist: rdkit
Requires-Dist: pywin32; sys_platform == "win32"
Requires-Dist: jupyter; extra == "development"
Requires-Dist: twine; extra == "development"
Requires-Dist: bumpversion; extra == "development"
Requires-Dist: pipdeptree; extra == "development"
Requires-Dist: ipykernel; extra == "development"
Requires-Dist: pyteomics; extra == "development"
Requires-Dist: scikit-learn; extra == "development"
Requires-Dist: matplotlib; extra == "development"
Requires-Dist: autodocsumm; extra == "development"
Requires-Dist: myst-parser; extra == "development"
Requires-Dist: sphinx; extra == "development"
Requires-Dist: nbsphinx; extra == "development"
Requires-Dist: jinja2; extra == "development"
Requires-Dist: contextfilter; extra == "development"
Requires-Dist: furo; extra == "development"
Requires-Dist: tqdm; extra == "development"
Requires-Dist: psutil; extra == "development"
Requires-Dist: biopython; extra == "development"
Requires-Dist: numba; extra == "development"
Requires-Dist: numpy; extra == "development"
Requires-Dist: pyyaml; extra == "development"
Requires-Dist: pandas; extra == "development"
Requires-Dist: h5py; extra == "development"
Requires-Dist: contextlib2; extra == "development"
Requires-Dist: xxhash; extra == "development"
Requires-Dist: regex; extra == "development"
Requires-Dist: pydivsufsort; extra == "development"
Requires-Dist: pyahocorasick; extra == "development"
Requires-Dist: pytest; extra == "development"
Requires-Dist: pre-commit; extra == "development"
Requires-Dist: nbmake; extra == "development"
Requires-Dist: jupyter; extra == "development-stable"
Requires-Dist: twine; extra == "development-stable"
Requires-Dist: bumpversion; extra == "development-stable"
Requires-Dist: pipdeptree; extra == "development-stable"
Requires-Dist: ipykernel; extra == "development-stable"
Requires-Dist: pyteomics; extra == "development-stable"
Requires-Dist: scikit-learn; extra == "development-stable"
Requires-Dist: matplotlib; extra == "development-stable"
Requires-Dist: autodocsumm; extra == "development-stable"
Requires-Dist: myst-parser; extra == "development-stable"
Requires-Dist: sphinx; extra == "development-stable"
Requires-Dist: nbsphinx; extra == "development-stable"
Requires-Dist: jinja2; extra == "development-stable"
Requires-Dist: contextfilter; extra == "development-stable"
Requires-Dist: furo; extra == "development-stable"
Requires-Dist: tqdm; extra == "development-stable"
Requires-Dist: psutil; extra == "development-stable"
Requires-Dist: biopython; extra == "development-stable"
Requires-Dist: numba; extra == "development-stable"
Requires-Dist: numpy; extra == "development-stable"
Requires-Dist: pyyaml; extra == "development-stable"
Requires-Dist: pandas; extra == "development-stable"
Requires-Dist: h5py; extra == "development-stable"
Requires-Dist: contextlib2; extra == "development-stable"
Requires-Dist: xxhash; extra == "development-stable"
Requires-Dist: regex; extra == "development-stable"
Requires-Dist: pydivsufsort; extra == "development-stable"
Requires-Dist: pyahocorasick; extra == "development-stable"
Requires-Dist: pytest; extra == "development-stable"
Requires-Dist: pre-commit (==3.7.0); extra == "development-stable"
Requires-Dist: nbmake (==1.5.3); extra == "development-stable"
Requires-Dist: numba; extra == "stable"
Requires-Dist: numpy; extra == "stable"
Requires-Dist: pyyaml; extra == "stable"
Requires-Dist: pandas; extra == "stable"
Requires-Dist: h5py; extra == "stable"
Requires-Dist: contextlib2; extra == "stable"
Requires-Dist: xxhash; extra == "stable"
Requires-Dist: biopython; extra == "stable"
Requires-Dist: psutil; extra == "stable"
Requires-Dist: tqdm; extra == "stable"
Requires-Dist: scikit-learn; extra == "stable"
Requires-Dist: regex; extra == "stable"
Requires-Dist: dask; extra == "stable"
Requires-Dist: dask-expr; extra == "stable"
Requires-Dist: pyahocorasick; extra == "stable"
Requires-Dist: pyteomics; extra == "stable"
Requires-Dist: lxml; extra == "stable"
Requires-Dist: rdkit (==2024.3.3); extra == "stable"
Provides-Extra: development
Provides-Extra: development-stable
Provides-Extra: stable
Description-Content-Type: text/markdown
License-File: LICENSE
License-File: LICENSE.txt
[Description omitted; length: 9595 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.1.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
alphabase/__init__.py sha256=aNReyx8MoIZ0AVwThU6RpCZ-nGd2UnF7glwv3hyW_kw 1394
alphabase/cli.py sha256=C5vfyqI_yYSbqd_89HgOVnBa5f62IDYP10LfBEQgmas 35
alphabase/gui.py sha256=C5vfyqI_yYSbqd_89HgOVnBa5f62IDYP10LfBEQgmas 35
alphabase/test_data_downloader.py sha256=riql160NW46oSIeqT7zET-ydoUXgkVs6jvt6nVFY8e8 4862
alphabase/utils.py sha256=5BfR7Wkhvj2MTxGHtKzjmfIh5T2ZqyL31GwLggJh01M 1197
alphabase/yaml_utils.py sha256=AOrFTgihXQT7u3u6kfcN-J2WSl8QrgFeogwvxwVF_cA 279
alphabase/__pycache__/__init__.cpython-39.pyc sha256=I1mnQR4Suiq7pzODQzptJH7R1nuPnc-toaHNH08gMGw 1238
alphabase/constants/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
alphabase/constants/_const.py sha256=URMjZzCcJUxRXmn1LW9GAQE9TUpaAk_5iVKRPJ0kaZw 627
alphabase/constants/aa.py sha256=bjuY7gG3qk3w8hOw8JE8pn3Oi3VzdNwGLHYC_H0nbfE 5019
alphabase/constants/atom.py sha256=e6ZUZmvbPAmlg1YAngkyo8uxV1GubNbG1nYbOIcTEzI 12476
alphabase/constants/element.py sha256=Qj3nce4WlCNjxVdWyoCzNWODPdBR8ZaMzbv5qW09m8A 302
alphabase/constants/isotope.py sha256=PXi5xVfcIhvZp7kIEsouiSvbUn62hPetX-eRdogzrtU 9364
alphabase/constants/modification.py sha256=2X3jJkGtdPQ5a10iCJ7YwN22pu3uviiTH3Mo8rjbVSs 14040
alphabase/constants/const_files/__emass_element.yaml sha256=0Kq5u2hMHVHt-bPrfH04GBZ9EiwuKxhXsySIkR1_8gQ 10671
alphabase/constants/const_files/amino_acid.tsv sha256=TaYN3IjPFZYM4ZErM8Jp7rsyTuuovZfmV8ZZn-G8CrA 1593
alphabase/constants/const_files/common_constants.yaml sha256=uypEgs4G_BdDgNxNYG9QStvYO7sMTV3MGSnnH5XRHEA 440
alphabase/constants/const_files/contaminants.fasta sha256=fhPDf0A-9mqa37XyIDh36zF29ur9wRDGLSmcgjlPcBs 153267
alphabase/constants/const_files/modification.tsv sha256=aCF81NRjDZbHBRBOii_JegjwX9y4mOXybWnSr-FTxxk 277651
alphabase/constants/const_files/nist_element.yaml sha256=W1qhc2HwN8loM0E2daoJ9liQiAs39ngpa8fe2uUpajo 11415
alphabase/constants/const_files/protease.yaml sha256=jdTOmlUlL2G-39fVjYjbuXcwkqG325VP886OyqJAYwk 1557
alphabase/constants/const_files/psm_reader.yaml sha256=h5GJm1ys92-ZxrT0GoIgdpaCxLhfXHbHo3Z204gBV_w 7227
alphabase/constants/const_files/quant_reader_config.yaml sha256=6FFYvDGQ2wHhEXpLIRnxaXYtgTJ6JOQeHlB21hc--y0 21079
alphabase/io/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
alphabase/io/hdf.py sha256=WGuyY3VeU2NY8ukM3BpQyaSJgkbEvX3LlqYVliVLTC8 18950
alphabase/io/tempmmap.py sha256=nnIogCC6TNDZ1yA9VtRPRW0paAF0A6Ob0mAyNJSS6e4 9819
alphabase/peptide/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
alphabase/peptide/fragment.py sha256=Q1-qHZGCT3_EQ5LeHoS4Dwfo0OzY6UVVnzAdjGxVhs8 48756
alphabase/peptide/mass_calc.py sha256=TPwPVGaUd-L0jAIaLOgmJy5CDyqW11KitrZjD8S9VbU 7509
alphabase/peptide/mobility.py sha256=p-8AEBYaTtu2AM6VJPahPsysiGVwKkxA0-2s5-twAec 3310
alphabase/peptide/precursor.py sha256=FyWlrhCWIj3vE1OSIumhv0SkEY8KXFezMlEp05l5KS8 20441
alphabase/protein/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
alphabase/protein/fasta.py sha256=qRamSOlgkOFzfZBoAtAwACIQNMAosQf5_Du_L4x0sXs 46739
alphabase/protein/inference.py sha256=S0Ta9J_b8P_AAFAPE79usqD_WrScBxXK4r2uwVcub8w 427
alphabase/protein/lcp_digest.py sha256=FpMO8zETyDaRTpCv5qGSEDvValrGKjMiYxp_vCTBb5Y 2097
alphabase/protein/protein_level_decoy.py sha256=W0q2H-w7-QI-29hQDhhzirdP3Gd2ENiJ88Xjst8-2aU 2824
alphabase/psm_reader/__init__.py sha256=U-rq5Dmg2GbvZDKnj6RnFO-tGszFWvbmAWcOFa16h48 1738
alphabase/psm_reader/alphapept_reader.py sha256=XzeK8Vcn1DtwAugZR6wheDj-5Hi5-blNW6nFngIKSP8 3093
alphabase/psm_reader/dia_psm_reader.py sha256=c37kg3Kp9XHJ-Y2eN136nprFYCLaf6_R2cvw9SK32rw 5758
alphabase/psm_reader/maxquant_reader.py sha256=Lt2boPS8u-w7mzjG4Xf7wfgxqSWZIa2z_rcoI3GwAW0 9938
alphabase/psm_reader/msfragger_reader.py sha256=DDcTjL7ySO9nn9jFX63lSpAT2CJsVK6RoEpR3FYNSaw 6212
alphabase/psm_reader/pfind_reader.py sha256=sNmoYkdohLaRPiCRQp9DeMz2GampCtPGttHTq19OamE 4294
alphabase/psm_reader/psm_reader.py sha256=p67k7dJk0vhblw9wyzeEaSIvSP5K995hmfzL6Nd_QLo 18970
alphabase/psm_reader/sage_reader.py sha256=CcPMsSLs0V5w_XmmEdI2ZVZhPatlwElMZnT_S-4Bku8 20590
alphabase/quantification/quant_reader/config_dict_loader.py sha256=Bx53ZSZ2n24v4VFGgCCNIf-qM0dqhgtA38Rtln_YYBM 4115
alphabase/quantification/quant_reader/longformat_reader.py sha256=8nOg3YuDI5XFIbXKkAYMfxNGTPSAHkTIZ5Y6B9YEBEs 8168
alphabase/quantification/quant_reader/plexdia_reformatter.py sha256=Y8MQxahw0CMNW_zXTG6PwkYVoUCu3khqBXaU_UbQhRM 2415
alphabase/quantification/quant_reader/quant_reader_manager.py sha256=Kw9-UO9idKqceJm_mmhlhbf_-H6yrMl4I0ACDDb_8Qo 2465
alphabase/quantification/quant_reader/quantreader_utils.py sha256=IHkqkmyJJOrYzQsI0K9smUAJd6-awowK2HqzkJ273Ho 1228
alphabase/quantification/quant_reader/table_reformatter.py sha256=aVzMlEmynNfth_Uhy6-iqxEyOyZtIIBZIp70HKPaZlg 7669
alphabase/quantification/quant_reader/wideformat_reader.py sha256=-h3EQ4WfZ9tjj1fEABBkP1Jdn1DvJ9AMNlfBMZmTeCw 1091
alphabase/smiles/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
alphabase/smiles/peptide.py sha256=qd1aYdJx89s3UxPorVTZZLpTixxOlcJ0WpvutxlI1wA 7646
alphabase/smiles/smiles.py sha256=Fst1h1eGE4IHrzAZ_C-iXrym2yNv74MyDj7Sxifn9kg 9550
alphabase/spectral_library/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
alphabase/spectral_library/base.py sha256=QruWSb4MD-4Tgav89vNtcLC9vwrXFmJG8zGmw_wP_Uw 29951
alphabase/spectral_library/decoy.py sha256=XSpYLBHXRtehZ64JJwfsQtH80jUJ1trmjmqM7oTblPs 7382
alphabase/spectral_library/flat.py sha256=wB8GgOmirEUoPQBO4b2Kpp5fK92nyEItuISwHxx9yeE 16221
alphabase/spectral_library/reader.py sha256=6VhZTX5vVm24KlEqssCXktPoMFLv--rMFHDUFjjjh2U 11665
alphabase/spectral_library/translate.py sha256=Vn0KqESir8y4Dw1HH2tfeabiYflKT3p2SgOo0pJYISw 15766
alphabase/spectral_library/validate.py sha256=9-1LTx0JraqSqRVjAD1IOXqGAWikWnc5eA-q5T2XS9A 4932
alphabase-1.4.1.dist-info/LICENSE sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ 11357
alphabase-1.4.1.dist-info/LICENSE.txt sha256=oyflIMcfw3a5Oq6qDNwzW3Iip9-Wy8oxDRuiKMiHKW4 11338
alphabase-1.4.1.dist-info/METADATA sha256=f-pipekv9HVVpBUqBy8WVys7OYQUwKyxryFacW1Rago 15158
alphabase-1.4.1.dist-info/WHEEL sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ 91
alphabase-1.4.1.dist-info/entry_points.txt sha256=8WeAPDPS_PLINsbD5cYbxeKr0VhsbISjcVt8wBwW_fA 48
alphabase-1.4.1.dist-info/top_level.txt sha256=5bA5pGMltVNTWOLk70jYoMCa1lniZTkxmmAxB4XGffk 10
alphabase-1.4.1.dist-info/RECORD

top_level.txt

alphabase

entry_points.txt

alphabase = alphabase.cli:run