Path |
Digest |
Size |
ALLCools/__init__.py |
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154 |
ALLCools/__main__.py |
sha256=PEUlnR7UOqqRbzEDQpT6sOyGhqwlp7ii5-cvjCFEr5A
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27909 |
ALLCools/_allc_to_bigwig.py |
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8723 |
ALLCools/_allc_to_region_count.py |
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|
14233 |
ALLCools/_bam_to_allc.py |
sha256=F6WHSwXdQgo9ySmfeCtN7uxhHC1naRCQKCH9lFKfXjE
|
18951 |
ALLCools/_doc.py |
sha256=RRsB0Na-ugGc7OFx9_MG5rfdeF4JTaJH-n5F0fwNRCY
|
9228 |
ALLCools/_extract_allc.py |
sha256=Nvk3L_oSabiQo5UreB8T7ZQG4VseyIhzWXs29QN_Jgo
|
14905 |
ALLCools/_merge_allc.py |
sha256=dtkEkIM1VAL2aXZoAGTvYulY1sqdyoKqDr4EfnTJ5p8
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19061 |
ALLCools/_open.py |
sha256=frZKl6oH0gQNfjZze4OcNrdiRwr2Z6hWieFm32mWfaU
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18063 |
ALLCools/api.py |
sha256=5pZAxWiv5BSp6-pxh_fQTpriftQXyaYQzfSPqK2dgSo
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ALLCools/table_to_allc.py |
sha256=7bQNkxPBuqYlK2vmwszf8NGHtA3hE2YvhAYT1cIu8tk
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11318 |
ALLCools/utilities.py |
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18046 |
ALLCools/abc/__init__.py |
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ALLCools/abc/abc_score.py |
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13031 |
ALLCools/clustering/ClusterMerging.py |
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ALLCools/clustering/ConsensusClustering.py |
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29959 |
ALLCools/clustering/__init__.py |
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ALLCools/clustering/art_of_tsne.py |
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ALLCools/clustering/balanced_pca.py |
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ALLCools/clustering/chromatin_conformation.py |
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ALLCools/clustering/dmg.py |
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17639 |
ALLCools/clustering/incremental_pca.py |
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ALLCools/clustering/lsi.py |
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ALLCools/clustering/mcad.py |
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ALLCools/clustering/pvclust.py |
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ALLCools/clustering/rutilities.py |
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ALLCools/clustering/doublets/__init__.py |
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ALLCools/clustering/doublets/coverage_doublets.py |
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ALLCools/clustering/doublets/scrublet.py |
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ALLCools/clustering/feature_selection/__init__.py |
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ALLCools/clustering/feature_selection/feature_enrichment.py |
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10574 |
ALLCools/clustering/feature_selection/gene_panel_design.py |
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3393 |
ALLCools/count_matrix/__init__.py |
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ALLCools/count_matrix/atac.py |
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ALLCools/count_matrix/base_ds.py |
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23961 |
ALLCools/count_matrix/dataset.py |
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14453 |
ALLCools/count_matrix/h5ad.py |
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10291 |
ALLCools/count_matrix/mcad.py |
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5839 |
ALLCools/count_matrix/mcds.py |
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18713 |
ALLCools/count_matrix/snap.py |
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ALLCools/count_matrix/zarr.py |
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ALLCools/dataset/__init__.py |
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ALLCools/dataset/dataset.yaml |
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168 |
ALLCools/dataset/directory_structure.py |
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2041 |
ALLCools/dataset/entry_point.py |
sha256=RdCPme-2Mjr50r9lma9bSzLDFvrP1tLtLKZJq-II37A
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181 |
ALLCools/dmr/__init__.py |
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133 |
ALLCools/dmr/call_dmr.py |
sha256=2afrzT_XGTC2VOiYs6YTDG2DbXiLJoGibi9dTHA2NLc
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8795 |
ALLCools/dmr/call_dmr_baseds.py |
sha256=Ub-rcBvLio_EaFGPeyOpKQM8Bfw0-qLE2lw-vG-3tpc
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7010 |
ALLCools/dmr/call_dms.py |
sha256=hVwTm1UO_dRqAmpr_Iu7KyLp8aq2nJ9Kq1XyhX2YOHY
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7321 |
ALLCools/dmr/call_dms_baseds.py |
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9459 |
ALLCools/dmr/parse_methylpy.py |
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2461 |
ALLCools/dmr/rms_test.py |
sha256=wDKgNdDpk-Ng2gVq_xl347CfIOKWEa5_NrDDvr_JZJs
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4503 |
ALLCools/genomic/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
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0 |
ALLCools/gtf/Gtf.py |
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5639 |
ALLCools/gtf/__init__.py |
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ALLCools/gtf/utilities.py |
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1164 |
ALLCools/integration/__init__.py |
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ALLCools/integration/cca.py |
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12569 |
ALLCools/integration/confusion.py |
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ALLCools/integration/metric.py |
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ALLCools/integration/seurat_class.py |
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31959 |
ALLCools/jbrowse/__init__.py |
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4794 |
ALLCools/mcds/__init__.py |
sha256=-IdlXe2fzc521JjtgbB9i38BFsSMtAUlqMYdjYaR4-M
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ALLCools/mcds/base_ds.py |
sha256=6oy3ilNzwfuBPVSDQyQrTz3d3LAl6DwE4Fw0PNdR90M
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27019 |
ALLCools/mcds/cool_ds.py |
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13557 |
ALLCools/mcds/correlation.py |
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14383 |
ALLCools/mcds/mcds.py |
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57795 |
ALLCools/mcds/region_ds.py |
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39474 |
ALLCools/mcds/utilities.py |
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ALLCools/motif/__init__.py |
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ALLCools/motif/cistarget.py |
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4074 |
ALLCools/motif/dem.py |
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ALLCools/motif/motifs.py |
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ALLCools/motif/parse_meme.py |
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ALLCools/motif/snakemake.py |
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ALLCools/motif/default_motif_set/JASPAR2018HOCOMOCOv11Jolma2013.meme |
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ALLCools/motif/default_motif_set/JASPAR2018HOCOMOCOv11Jolma2013.metadata.csv |
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ALLCools/motif/default_motif_set/JASPAR2018HOCOMOCOv11Jolma2013.thresholds.csv |
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ALLCools/motif/default_motif_set/__init__.py |
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ALLCools/plot/__init__.py |
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ALLCools/plot/categorical_scatter.py |
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ALLCools/plot/color.py |
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ALLCools/plot/continuous_scatter.py |
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ALLCools/plot/contour.py |
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ALLCools/plot/decomposition.py |
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ALLCools/plot/dendro.py |
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ALLCools/plot/interactive_scatter.py |
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ALLCools/plot/qc_plots.py |
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ALLCools/plot/size.py |
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ALLCools/plot/sunburst.py |
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ALLCools/plot/text_anno_scatter.py |
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ALLCools/plot/utilities.py |
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ALLCools/plot/genome_track/GtfTrack.py |
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ALLCools/plot/genome_track/HiCMatrixCoolTrack.py |
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ALLCools/plot/genome_track/__init__.py |
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ALLCools/plot/genome_track/_pygenometrack.py |
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ALLCools/pseudo_cell/__init__.py |
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ALLCools/pseudo_cell/pseudo_cell_kmeans.py |
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ALLCools/pseudo_cell/pseudo_cell_knn.py |
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ALLCools/reptile/__init__.py |
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ALLCools/reptile/reptile.py |
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ALLCools/schema/__init__.py |
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ALLCools/schema/mcds_schema.py |
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allcools-1.1.0.dist-info/entry_points.txt |
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allcools-1.1.0.dist-info/LICENSE |
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allcools-1.1.0.dist-info/WHEEL |
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allcools-1.1.0.dist-info/METADATA |
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allcools-1.1.0.dist-info/RECORD |
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