adagenes

View on PyPIReverse Dependencies (1)

0.2.5 adagenes-0.2.5-py3-none-any.whl

Wheel Details

Project: adagenes
Version: 0.2.5
Filename: adagenes-0.2.5-py3-none-any.whl
Download: [link]
Size: 439929
MD5: 7af2c10b87af4f5125d54f96f84503af
SHA256: 81f939b866e39c108a815ebd5ecb95be00b9d820a463055848bbd477e26e1536
Uploaded: 2024-12-13 10:56:28 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: adagenes
Version: 0.2.5
Summary: Generic toolkit for processing DNA polymorphism data
Author: Nadine S. Kurz
Author-Email: nadine.kurz[at]bioinf.med.uni-goettingen.de
Home-Page: https://gitlab.gwdg.de/MedBioinf/mtb/adagenes
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: OS Independent
Requires-Python: >=3.9
Requires-Dist: requests
Requires-Dist: liftover
Requires-Dist: plotly
Requires-Dist: openpyxl
Requires-Dist: matplotlib
Requires-Dist: scikit-learn
Requires-Dist: blosum
Requires-Dist: pandas
Requires-Dist: python-magic
Requires-Dist: upsetplot
Requires-Dist: numpy
Requires-Dist: flask
Requires-Dist: Flask-Cors
Requires-Dist: flask-swagger-ui
Requires-Dist: onkopus; extra == "extra"
Provides-Extra: extra
Description-Content-Type: text/markdown
[Description omitted; length: 5742 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.38.4)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
adagenes/__init__.py sha256=ju981ypDEqS3ZkeXxk01JUe3_vOPu7MCkwN0JncE978 729
adagenes/app/__init__.py sha256=KN5HfeEyfh_xG6Xz_A_6Tfq2f8UMDdzEgmgTMGu3fLA 208
adagenes/app/analyze.py sha256=FNudfK_gXQnZSQ-8XJJbwo4NEk-8EQNbVrHURhpB188 7608
adagenes/app/bframe_to_dataframe.py sha256=jFvgKg2tkeOWHCxFm6liW04LVjdq8d0O-k9IFdvD4GY 2489
adagenes/app/filter.py sha256=JNxUdcjcKBrY2MO6M0ZZYRqeQa_BN9JOoyfGsfprAUI 1324
adagenes/app/load_data.py sha256=F88_Woo_zj7DUp5cl5HhPo5h7LU7Zz3TzLk6KfFV-N8 500
adagenes/app/parse_data.py sha256=QbYsQmk_QlzXhj-fuNnnJWrGUS3Ff5vKXgCmM9Ps42Y 1892
adagenes/app/processing.py sha256=U6_jqbfby0Ow0oL1rh3a2gTYpJ1Y3UJvImp_uNAQ6vI 9643
adagenes/app/sample_data.py sha256=b6_rvORaq-4S0G_Jj32xxdGpaRepb_JoshmVBMQDl5U 380
adagenes/app/table.py sha256=OmQFlyyKjlfT_-jY3ldW264x96-lKkOWwGuI8xOT8N8 1319
adagenes/app/sites/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
adagenes/app/sites/about.py sha256=_wp8-BNdCahdm26RfY3hnt7FR43RFi1t7L_EYwvsUZg 223
adagenes/clients/__init__.py sha256=7IfOlQP8W2wRY6Ef7SGndEEJ7CHKKsVDYBTfBv5SbM8 298
adagenes/clients/client.py sha256=5lXELY-is4_PHwE8WJPJkHV_QbAT4A8nIJTy3WFSQtE 166
adagenes/clients/annotate/__init__.py sha256=OFtQ-k770CGOXO0IXfj9vGL17hi4RkX_xT8gfiCiGio 96
adagenes/clients/annotate/blosum_client.py sha256=gSKVN4XfMlk94R6jgAzuLQ6KbODFH5gAIU0G3WAtWJg 1305
adagenes/clients/annotate/liftover_annotation.py sha256=g7DCnhfPs7MN5ACvQBsoCNns0C11yfE0ceSRuAfh_9M 6401
adagenes/clients/annotate/type_recognition.py sha256=9yn497p34z-BtNmMDmqnDN567Prm7Pec07hRvzK_xik 1786
adagenes/clients/api_clients/__init__.py sha256=Tt5tYNG6QQ1SBfjw-xC0tz4H7IpzlrnoRsRB8ATUCSc 30
adagenes/clients/api_clients/uniprot_client.py sha256=yldZc66fe2dXMjVGJNOrXi8_HUPwuOdZykPnXv4yqY4 1689
adagenes/clients/filter/__init__.py sha256=DQsZnE1SkTvEIe3dCm9Nn9HEV_Mnwcu6AIXiOqDwPHY 250
adagenes/clients/filter/allele_filter.py sha256=ajLt6s_M8HxzvLfIIdnkxljG2QLgS7OFcQtjcRhb9Qo 673
adagenes/clients/filter/chrom_filter.py sha256=NAylb4DU3EjtDW7CpUqHsirC6YsQWslaw-aSDFs7hTg 901
adagenes/clients/filter/defined_variant_filter.py sha256=MW_1OMrsaT5K0MqCcb60s_ZSA2rZXI0ebY9MBFfpukc 547
adagenes/clients/filter/filter_feature.py sha256=za_PkgO_XElKzXTYhUowd4f1d2ane7jYc8L05z7KX2g 2334
adagenes/clients/filter/position_filter.py sha256=qb1vnMV7lv8g5fw1i00GZpJ-TkhTItJBQ8Ytb0SHlhM 1759
adagenes/clients/filter/random_variant_filter.py sha256=8AbgakiVYrxp8hfE3tcdjs13RkC1W4A-EajyoLNRYX8 1536
adagenes/clients/filter/section_filter.py sha256=wS8-XA4LlyqT3OrCfhfg-SNnQggbWTTcwv6KlQv2qjk 690
adagenes/clients/filter/type_filter.py sha256=KwXfoYXAfoGXLZ-DYUZ_hXCZdoBGmgolGwdaaIaVU14 1038
adagenes/clients/network/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
adagenes/clients/network/rest_client.py sha256=TGLtqTz4kLck4OA1hYWZmZp8GgWVS-8TNDnUdIjo-lw 391
adagenes/clients/plot/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
adagenes/clients/processor/__init__.py sha256=r-jDeb0V6XXiXyM8qAbGTO-4fwY_IkIYNNkDRQ0-eiU 29
adagenes/clients/processor/avf_processor.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
adagenes/clients/processor/csv_processor.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
adagenes/clients/processor/vcf_processor.py sha256=iquC8qv2r9IYYyGR-m-XhJ3vA-x2Gs7EKGLvmmOqXMU 15787
adagenes/clients/reader/__init__.py sha256=ynTKN6Zms9oo1Gm474SZsv01dOyOI-ppJYRT2xsoRuY 294
adagenes/clients/reader/avf_reader.py sha256=0SvF03DzugPb9dnz0MxQisHvYKzkzK32mncpAtr4L-E 2023
adagenes/clients/reader/bed_reader.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
adagenes/clients/reader/csv_reader.py sha256=z31x8R4gBLr-Zwmqv8_v6fAwt0JbkuVmYEcRG3EAg3M 4534
adagenes/clients/reader/fasta_reader.py sha256=xhEN50Lr15dLeAb-X1coqBjBfAxX_qWcZslD0RsT6AI 2114
adagenes/clients/reader/gtf_reader.py sha256=EbFlNBKYBDvQifO3nW3o-aYiTHsDN_a-9DvgvRcPk-4 6391
adagenes/clients/reader/json_reader.py sha256=6eEyww1e1FxLNB-xES2APQH-vOLUlwhux8axt3gd7M0 867
adagenes/clients/reader/maf_reader.py sha256=1iur1ie5RfBCsRMocYD1R92JVI75RkFtXIhHnX2hG8k 4235
adagenes/clients/reader/reader.py sha256=xJiHgOnKCg1EvC7ty83_8rx8b-pOsK7jv0uGNm0IX10 530
adagenes/clients/reader/tsv_reader.py sha256=RGWxelz_aDp-CQsk0fivIoQOQ9uQ1E1TpiEswcr6uCg 706
adagenes/clients/reader/txt_reader.py sha256=m1PXpoilx3SSk61QW1eMSU_OehINnhXysrA1W7RlW3I 934
adagenes/clients/reader/vcf_reader.py sha256=NeJWjyrOa4vNTAaLdm1s60W0q-qfzcPZ1N7Bb2EbCFw 7503
adagenes/clients/reader/xlsx_reader.py sha256=6XbvSEfvEXyXhcHW3asfz2Ylqmt0Jspp_ZqIlUyLtGU 2843
adagenes/clients/sort/__init__.py sha256=Js75C9e9VuuvRzaahQi-Qek3biMw7CBAz4XroKYVZas 31
adagenes/clients/sort/positional_sort.py sha256=uEZxqjJgz-Ns037QQlQtgW2HjiugcTKOPNCo4dvoHe0 1183
adagenes/clients/transform/__init__.py sha256=BiXicY_q55hIQBrGOzQm6oaPMw865te1Qq_sGD12srg 179
adagenes/clients/transform/combination_client.py sha256=zS0h23B01R7zOsyLhTOlqCy3vTJTNKIj3wvUcgXoTKk 2161
adagenes/clients/transform/dataframe.py sha256=K4rNAt5H-2FLDj_dEcMtT0BvBrqv6u2K9HEyv52R3hw 241
adagenes/clients/transform/dragen_to_vcf_client.py sha256=QxS85iQXW9S4gdUyEf5BAzdo-1bes0tTVUZAngpyxSY 2827
adagenes/clients/transform/fasta_variants.py sha256=X3VhE_2Cgps85afeD64dRleAcpHDQBP5ZScFVDwASFU 1158
adagenes/clients/transform/liftover_client.py sha256=o2FAGm6gOUwJ02QhU70rmA00yiuA_oQHj5GOnrQHyqE 10268
adagenes/clients/transform/normalize.py sha256=bmtXh8F9c8FxFEW8d5390ZvyGd8ReMcHQ9PvaO8sZL8 1080
adagenes/clients/transform/protein_to_genomic.py sha256=VxW7jeDCY9jWlcahoGq4bnlflncfABdM9Eg4Tjjwars 1955
adagenes/clients/transform/transcript_to_genomic.py sha256=daEdpEyAJIa8b2VkCqSKcw8PaExcB6Qro80XNes_sHA 2
adagenes/clients/writer/__init__.py sha256=yuueB70ODmWy_2opep5PesEQGlhQ_WdFn5sdZoGr_fM 327
adagenes/clients/writer/avf_writer.py sha256=AALV5LaV33U9izrjbM9pUc6wxiXMv_uAe1CNrQ7W5wE 2708
adagenes/clients/writer/csv_writer.py sha256=iu2Ne0ZHxPPYpknyx1FPFZdhT-CpA-v95y2xKxrx9Hw 11714
adagenes/clients/writer/json_writer.py sha256=bHvRrd1YjzKE4hydz4bnmHENCpAce_yoJZBILY0XaQs 3140
adagenes/clients/writer/maf_writer.py sha256=tUGM_iFLDMlX-vqcMLVvp-U3RSmszQQgda_DlKKmhUw 2340
adagenes/clients/writer/normalized_data_writer.py sha256=aZxf72GXW1R7BOT7tlOhVOFuKzVRsCCwqroVfgWWL5w 682
adagenes/clients/writer/pandas_writer.py sha256=06oi16KkkLkAJ81dObK9A639vF5blwN6OI3ylM7Geqw 1719
adagenes/clients/writer/pdf_writer.py sha256=gVy9o5LamlRpYBvj9gW2N3zT6qBx3ieCxJ7Va4StVRA 136
adagenes/clients/writer/tsv_writer.py sha256=eo-Py4zFiqx2IKBxVGarZ2p3aSScxlGO7bcjW3wVwng 789
adagenes/clients/writer/txt_writer.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
adagenes/clients/writer/vcf_writer.py sha256=RlwCKRhZ3ePJaLJRvufOCrEbKdH7E-7UZUA8uFFxkok 8533
adagenes/clients/writer/writer.py sha256=n1miLqfI_m1pCtMY5_YHugWAnWANnluhAhkXP9-1zDk 945
adagenes/clients/writer/xlsx_writer.py sha256=BVJAVkhKNxftuVnV04YCvUTZd5gdPg7v-OUBnmt1sAA 1400
adagenes/conf/__init__.py sha256=1uf-Pz-1sqbveU7NOcLIegIR10qBuLiQ4IASKUkshHo 45
adagenes/conf/config.ini sha256=qiumGkKXZ4n8SGgVpiyi5-SWyk9wjriovlmQ3doFOPE 570
adagenes/conf/read_config.py sha256=o8Qdt1cF8djyJI-2sQ_kWM9znYN6PFhBa95GDhfQxPo 11080
adagenes/conf/vcf_config.py sha256=TApZipjEo-0rdX67mhNM9p2pdK9RePhcr4FJNCarUcs 640
adagenes/plot/__init__.py sha256=rNas6ZRWYrkrDvNavrubPrbmxGmzsEym8AUhCRiEosU 169
adagenes/plot/generate_plot_graph_data.py sha256=JArMT7oZxvAa5hRWrcQVWA43WJ0i2qK0KCGs3UPeWDE 4439
adagenes/plot/generate_upset_plot_data.py sha256=TuZ18QwtifksO_fY31pCpxNy7di_jVytmap4Rig2GSU 1243
adagenes/plot/roc.py sha256=HKzoCTXEl8681tZR76kQDtEYKd0rOJZSitguUZ306tc 2485
adagenes/plot/generate_data/__init__.py sha256=ZFLCDtMCg5DeOpGbNEJt16Iv2uBBwIODlMz3Gg9nTaY 435
adagenes/plot/generate_data/generate_aa_features_heatmap_data.py sha256=NEZVh2i5V1DO7DFtwPgiFY3f6ZnAVJsl7DkPNs7hS2s 25
adagenes/plot/generate_data/generate_chromosome_positions_data.py sha256=hOL9Cz8KO1-7KU2e2rW6knAeyERJHpLdZAgw5NowGFE 1312
adagenes/plot/generate_data/generate_needleplot_data.py sha256=0_YXOh4gK7x0oR4eIrVK8N3tW1d-JYJn9obP7f7l3aE 492
adagenes/plot/generate_data/generate_protein_pathogenicity_heatmap_data.py sha256=7YGakt1Er11PHL69YXU8a4yQq90wcdjTfHAS2_6G3jI 13148
adagenes/plot/generate_data/generate_protein_plot.py sha256=POTw3s-7NevZWM_zsMucf-Wj4HgIcvBBI6chpbMDFQg 591
adagenes/plot/generate_data/generate_radarplot_data.py sha256=RAepwehOYZG6XRVGsJg8RtswXYeZnDe5YMe30bQsv2I 5118
adagenes/plot/generate_data/generate_sunburst_plot_data.py sha256=DKTXJvdOuhEtQlD8nhqLd9zk6lyHqSvY6yR18ngTiX8 20507
adagenes/plot/generate_data/generate_upset_plot_data.py sha256=dpEiSb0qLIYOjIhpSdbZ98V1LIUnrzjAcii7tO2sO_k 7811
adagenes/plot/generate_data/plot_config.py sha256=vGDGP6KhG3y0ZP3Y5euDGBtqVXtvv6MdjRQXl5LB450 2196
adagenes/plot/generate_plots/__init__.py sha256=K3ansgpsZa9WiD0CqwEBbvFGxy2spvlMPzy2mPFrJMI 364
adagenes/plot/generate_plots/drug_classification_intersections.py sha256=NUfEBC0vbp3XyCN0EzORyq4AYSsE1csRr7BhzHOAHso 2591
adagenes/plot/generate_plots/generate_aa_features_heatmap_plots.py sha256=6XUT7wdLyqknfLSA1tYtGku2bbJZxPm0upkPVoG43Qk 15659
adagenes/plot/generate_plots/generate_network_graph.py sha256=MhRbmgsjBf6SKoolJc2vFtwhQxXqwnnLCzcrscpNduI 4321
adagenes/plot/generate_plots/generate_protein_pathogenicity_heatmap.py sha256=yImBXPKHdOyU5DgGhmRPPoSyZsIT2K9SWggxKjqe4ZE 1166
adagenes/plot/generate_plots/generate_radarplot.py sha256=vRcyV7rkPmhKqG83GT6EivA7dIjmr-KNX840sC30TWU 3019
adagenes/plot/generate_plots/generate_sunburst_plots.py sha256=XgPvc20luaZL0G3uGuCWn6mg8LSnqNM5z3tl9gpXRWQ 25413
adagenes/plot/generate_plots/generate_upset_plots.py sha256=eANRlgaF2ILJY9fvtfPv0BjZUbpewPWVl6Vc4QVR4pQ 4609
adagenes/processing/__init__.py sha256=PQF_FI3s979KQgxZ8YQG0HIzA08y1melpsFvy4PpCF4 129
adagenes/processing/json_biomarker.py sha256=Xm5lRL46bdvLu4PTOU0jtoUlYvGOjA2G3GY4NZN5R9Y 3286
adagenes/processing/parse_http_responses.py sha256=Tp6ggOjlA0LTTodOlZIg0IfW7tcUS6YpaWF1LQ2fFNI 1172
adagenes/processing/process_files.py sha256=DOvuyZGdS49Qs8Mwzdnhtgb6f_4FhFkFgGdLPbJse7U 10520
adagenes/processing/protein_to_genomic.py sha256=azQHN_ORwgu9W_tWlH-Y5fJtMnJ7t2Qf9k6DWTef9vU 431
adagenes/run_scripts/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
adagenes/tools/__init__.py sha256=AbIFvvKksbc92BaYkdUpQZQoCvVm8KpfypP6e18QuME 998
adagenes/tools/biomarker_types.py sha256=Dqyl3QG59kA4lc_aScFkbJC98roz5KRr2AtkRYo4CUw 3562
adagenes/tools/client_mgt.py sha256=3aE5wIriEVz6TgkSq1SgZaZxqkZK2Bccc7NdvTIhskM 6166
adagenes/tools/data_io.py sha256=i4Lpf7O9kRkEbs8Fbt2i5GIGrvX5teLlPmWXpaMs9Eo 6678
adagenes/tools/data_structures.py sha256=oJf0TwCG3RkL-eNzsb9QFbIggI_ORSME7dVgv5Z5DuE 2685
adagenes/tools/dataframe.py sha256=EsiP8c8Ewdv1zp6dRf1w2AX-mXjd8qZUwPy-fJJSJ5g 1103
adagenes/tools/format_requests.py sha256=hVfM3inZsJiPgvja7J6vBqPTsHF_KEP24vAnWJzl6y4 717
adagenes/tools/hgvs_re.py sha256=9HZ8YEZDtTyoYaDJUpsUTw7IXS7oHy4bAcR6AFYJrwY 10600
adagenes/tools/identify_biomarkers.py sha256=gUXYNM1jqyQhy_jTzw38iy8ocG31BSlV-y7cuz2RKfw 20455
adagenes/tools/json_mgt.py sha256=l32VPCqkyg6NNadpnH_yDDDN5iJiK1RiL-meaObQ-wo 3142
adagenes/tools/log.py sha256=RcYacQ9GuUj2A_u_xAGfRisO04DFHVe07OUmfH7Vczk 764
adagenes/tools/maf_mgt.py sha256=HirN3D9ziG6cfh-3zFPF6mwguNEDk5_pr5EvVgVPJhg 4962
adagenes/tools/module_requests.py sha256=0jzGoDVPb8FloMRNwr4qDEUMPeG2H8VyfYPa-rybkEY 5759
adagenes/tools/normalize_variants.py sha256=k58LgA-QonYtnLtWORMepzymm2mkfDJXkGBEYy3vxo4 9932
adagenes/tools/parse_annotations.py sha256=bNLsP5dDrZX0OT0z6RFrPoF5EwjAwDFI1TuVSHgO-do 937
adagenes/tools/parse_args.py sha256=YDArdoY2qq8JpQ1ZSnGKfo91OGgkmS9WodPFn6aioZ8 2141
adagenes/tools/parse_cancer_type_labels.py sha256=GKEiTeTWkdceMBZ-HxJ3syTnYefs3WLk5Pq0HP8Dhyg 204
adagenes/tools/parse_dataframes.py sha256=6RHBZyPTjRqu8OdmMczM8Z_KQK3CQLqIXZNmvEciNHA 22869
adagenes/tools/parse_drug_names.py sha256=_7d2wZhOG7yNACoF6DbiIK_3IA1HMIhjOav8PAsPGKs 2597
adagenes/tools/parse_genomic_data.py sha256=YpjQH1DCs11yzUdZGah4SZLFR9J9zxVG9APv2VIURxk 8725
adagenes/tools/parse_indel_locations.py sha256=aJeoDu8H9OVuyBNRHsa9A8vVEB0h-uLejyd4aAXe3w0 338
adagenes/tools/parse_vcf.py sha256=B4Oi4DZZpTDJNK6OiBx8_GqQlirNN2_FeK7_duQcOFM 10358
adagenes/tools/preprocessing.py sha256=vLllWuZlvi7lGSfUnyliZYueI-t7cdty1hapFIvgZtg 26489
adagenes/tools/reference_genomes.py sha256=4WDZj5KJqB9AoHomzqk3te75LVlpNw8ps5DMB4mmePc 344
adagenes/tools/seqcat_genetogenomic_client.py sha256=kUOAJO18IaVDjdVKr00jhh3BCqvoRSOLAtZy_5yEISQ 8397
adagenes/tools/seqcat_genomictogene_client.py sha256=sDUSYORIRsIZZSzQg_oiKs66d0LCfAHf6aw1l3WQREA 6766
adagenes/tools/sequential_annotation.py sha256=ZJQZKVY-wj8SNeE6yWT72UafJ9DWDBESyhq9IbQkYaw 11677
adavar/__init__.py sha256=Pr74bd7ewS7BSasPg3ETHxWYp8E3rUk3OExbY5-fk08 548
adavar/app/__init__.py sha256=m7t7-otHaS1fj99vV8ji9SndQ1EtiygRXRupMNBPQ84 130
adavar/app/bframe_to_dataframe.py sha256=md4yZz0r3x1R5WdScefVCKKcdq3upJl4r1xYPVj2Zwg 224
adavar/app/filter.py sha256=AXTf_4vFQGV1Q577CSq2PwHagS0pJ5rxntZmWIxfhA8 640
adavar/app/load_data.py sha256=IYbX-ojrTjsLVSbmtH4nJVCxGR5B7XkVaQVIqM7wtRU 444
adavar/app/sample_data.py sha256=Za_b189mZvs2q4BxVM0HPKfVnAJi4TGgUmug9PHf_EQ 298
adavar/app/table.py sha256=fbeUBe3MTSiPTvGIzsTwYkqClh9h39OHGjBSjjtFcyg 1106
adavar/app/sites/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
adavar/app/sites/about.py sha256=_wp8-BNdCahdm26RfY3hnt7FR43RFi1t7L_EYwvsUZg 223
adavar/clients/__init__.py sha256=-4NMlX_RIP1Je53Y1JiuXnc5EykJ92KSchTlNO8p7jY 225
adavar/clients/client.py sha256=5lXELY-is4_PHwE8WJPJkHV_QbAT4A8nIJTy3WFSQtE 166
adavar/clients/annotate/__init__.py sha256=OFtQ-k770CGOXO0IXfj9vGL17hi4RkX_xT8gfiCiGio 96
adavar/clients/annotate/blosum_client.py sha256=gSKVN4XfMlk94R6jgAzuLQ6KbODFH5gAIU0G3WAtWJg 1305
adavar/clients/annotate/liftover_annotation.py sha256=g7DCnhfPs7MN5ACvQBsoCNns0C11yfE0ceSRuAfh_9M 6401
adavar/clients/annotate/type_recognition.py sha256=DW-nJavdFGsw-_BEYYluncVvTFlDoJ1t0iRoFpWeOss 1307
adavar/clients/filter/__init__.py sha256=VE4uvnxgwo-iGiFKtXLRGiVLjUB4iIXIv8vfteE5_wE 114
adavar/clients/filter/allele_filter.py sha256=ajLt6s_M8HxzvLfIIdnkxljG2QLgS7OFcQtjcRhb9Qo 673
adavar/clients/filter/chrom_filter.py sha256=4FGgo0_XzhAU2T9Cubw8CJRDlf0Ty8DfKP4s8_-LPBA 585
adavar/clients/filter/filter_feature.py sha256=RZzZ_nemhFYxLp6XUgNE-2v_mTyp59KPzxEJnSt8mQg 1943
adavar/clients/filter/nan_filter.py sha256=7lBfLrnZ76kGyAKMZfZTg5mPQhiRc2ROK5aVS2MR1OI 1073
adavar/clients/filter/type_filter.py sha256=KwXfoYXAfoGXLZ-DYUZ_hXCZdoBGmgolGwdaaIaVU14 1038
adavar/clients/filter/variant_filter.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
adavar/clients/network/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
adavar/clients/network/rest_client.py sha256=TGLtqTz4kLck4OA1hYWZmZp8GgWVS-8TNDnUdIjo-lw 391
adavar/clients/plot/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
adavar/clients/reader/__init__.py sha256=ynTKN6Zms9oo1Gm474SZsv01dOyOI-ppJYRT2xsoRuY 294
adavar/clients/reader/avf_reader.py sha256=uatEASKX_-8cu58-ElNXPyKpIDfdhgNYTrK3UEabOVk 1736
adavar/clients/reader/csv_reader.py sha256=lByQj9HBOPnDELShtmfOO_yDMySyc0mcU4-YWSKZ3Do 2302
adavar/clients/reader/fasta_reader.py sha256=aXmL_n1xyg_KTVEqpxNNLF3Gl6y1VP5OWN6LQ46KAVs 2024
adavar/clients/reader/gtf_reader.py sha256=xMA4BgMHY-zTaiUM0OwQXgOgwhxSv14VF60k-fkxQAs 6119
adavar/clients/reader/json_reader.py sha256=mblFruY9KH8h7-dhoNhcjtsYkht1pJhGyJ7VVVn6o5k 819
adavar/clients/reader/maf_reader.py sha256=bHR7aR7RpOC6OvUY8PuqKwQR1OYKOwvaDEjbQ8yhGhQ 4134
adavar/clients/reader/reader.py sha256=U5zIXQU-Js7PRJQzfCfga8ns079tdBbVYOrqOg5TP30 473
adavar/clients/reader/tsv_reader.py sha256=sE2Zpau5jWr9OdqFZgw0p5KibmPLYNUJjUytiiUdBKg 1905
adavar/clients/reader/txt_reader.py sha256=v9S5B4702iN7SjmufsaERBEDx3-o9b1SryvF3Uhmbvs 5523
adavar/clients/reader/vcf_reader.py sha256=hPIvsay0ieLoeIP9Xccjv4CkbWkA7xq-QR3LjWROpQQ 6609
adavar/clients/reader/xlsx_reader.py sha256=iw0RXOMlqBAgNB7Nn5RlDdza2BWeHcSQ4fKTgGTu_rU 1924
adavar/clients/sort/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
adavar/clients/transform/__init__.py sha256=QjlvaNnvOtwNuzmI2zwXPTTP72rqu7I35cb6g2btOwA 81
adavar/clients/transform/dataframe.py sha256=K4rNAt5H-2FLDj_dEcMtT0BvBrqv6u2K9HEyv52R3hw 241
adavar/clients/transform/dragen_to_vcf_client.py sha256=LI1ePUmqACjaWyHyqr-cLVBixwbSwQZcQsAn8w8G0M8 2822
adavar/clients/transform/liftover_client.py sha256=iEoc19m_J9bsAeaF802Ccv0UbpJYJal0NNpyIU37d1Q 6098
adavar/clients/transform/normalize.py sha256=bmtXh8F9c8FxFEW8d5390ZvyGd8ReMcHQ9PvaO8sZL8 1080
adavar/clients/writer/__init__.py sha256=yuueB70ODmWy_2opep5PesEQGlhQ_WdFn5sdZoGr_fM 327
adavar/clients/writer/avf_writer.py sha256=vhp6ZSGiTsfn8Uu4xCwryeSmggAGPOzaLDKzaqm84qc 1358
adavar/clients/writer/csv_writer.py sha256=PLYrcPcJvok9_H0JDovfm_V5tp6C2Kofd_ky-hBrG-A 8433
adavar/clients/writer/json_writer.py sha256=bHvRrd1YjzKE4hydz4bnmHENCpAce_yoJZBILY0XaQs 3140
adavar/clients/writer/maf_writer.py sha256=PDm1T-4i3k0YA3Pf_Xfhr7DHnM4zwDC8dl0pMZl4qnM 2319
adavar/clients/writer/normalized_data_writer.py sha256=W6Eb9-zINaqioYYlusTIxR9khARNEVtcEx-XHE6tgV8 684
adavar/clients/writer/pandas_writer.py sha256=06oi16KkkLkAJ81dObK9A639vF5blwN6OI3ylM7Geqw 1719
adavar/clients/writer/pdf_writer.py sha256=gVy9o5LamlRpYBvj9gW2N3zT6qBx3ieCxJ7Va4StVRA 136
adavar/clients/writer/tsv_writer.py sha256=caF7O_PSu5j-IsoWXVU1ewlxaI1kNqDkJWyk0qafdzU 767
adavar/clients/writer/txt_writer.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
adavar/clients/writer/vcf_writer.py sha256=q3cEQuaNAQ84qPtkZ0s8dbLhRFyj0ydvhqgBLk8MDxU 8837
adavar/clients/writer/writer.py sha256=XPNK64JUFaWCTTgOWDidauSVfpFyd6eYp5cq8QoEomk 699
adavar/clients/writer/xlsx_writer.py sha256=070wSowrnmDy5Vh-YlIuYfQ1tdyHmPKRF09S6RG_T8o 1378
adavar/conf/__init__.py sha256=1uf-Pz-1sqbveU7NOcLIegIR10qBuLiQ4IASKUkshHo 45
adavar/conf/config.ini sha256=9DBfTpOdCTtSvKnxFE5jpxxYh-IfZdX8AVRiQ6rh1MA 518
adavar/conf/read_config.py sha256=0H1sgi8lIBXfyThO2KiYcjOxXcS7_1tvXexb1DshC5s 4722
adavar/conf/vcf_config.py sha256=TApZipjEo-0rdX67mhNM9p2pdK9RePhcr4FJNCarUcs 640
adavar/plot/__init__.py sha256=kClI2T5Zh5AY1Nc2W8HgZUa1ZerM5Rsh98Yh9Vs_5Ls 202
adavar/plot/generate_plot_graph_data.py sha256=PAEcmLGAh25nAfm8UujkFbiabMXvTYy6P8GJgeh87ik 4158
adavar/plot/generate_upset_plot_data.py sha256=TuZ18QwtifksO_fY31pCpxNy7di_jVytmap4Rig2GSU 1243
adavar/plot/roc.py sha256=HKzoCTXEl8681tZR76kQDtEYKd0rOJZSitguUZ306tc 2485
adavar/plot/generate_data/__init__.py sha256=jrBIUoErf3n_WEPko1rXGXpanuDoV1EiyYVEdAguLtQ 209
adavar/plot/generate_data/generate_chromosome_positions_data.py sha256=hOL9Cz8KO1-7KU2e2rW6knAeyERJHpLdZAgw5NowGFE 1312
adavar/plot/generate_data/generate_needleplot_data.py sha256=0_YXOh4gK7x0oR4eIrVK8N3tW1d-JYJn9obP7f7l3aE 492
adavar/plot/generate_data/generate_protein_plot.py sha256=POTw3s-7NevZWM_zsMucf-Wj4HgIcvBBI6chpbMDFQg 591
adavar/plot/generate_data/generate_radarplot_data.py sha256=RAepwehOYZG6XRVGsJg8RtswXYeZnDe5YMe30bQsv2I 5118
adavar/plot/generate_data/generate_sunburst_plot_data.py sha256=gnd2mxuBWTA1wkgO0QoOdmkn0Iyc8s75DtuUUfCFXpU 20062
adavar/plot/generate_data/plot_config.py sha256=vGDGP6KhG3y0ZP3Y5euDGBtqVXtvv6MdjRQXl5LB450 2196
adavar/plot/generate_plots/__init__.py sha256=bymS1uq-RGfQ69OvIPq8oYLp2F6iZlu0gNqeMj-jFmg 73
adavar/plot/generate_plots/generate_network_graph.py sha256=MhRbmgsjBf6SKoolJc2vFtwhQxXqwnnLCzcrscpNduI 4321
adavar/plot/generate_plots/generate_radarplot.py sha256=n4sGv-YbuMUiP4WFkt-G1Tc19lHpU0ZPmMRnetcaAWc 2925
adavar/plot/generate_plots/generate_sunburst_plots.py sha256=dUgNJJLR0kfrliptie5b3M-80rjaEOS8Er5n9ymm5tU 18207
adavar/processing/__init__.py sha256=MVVOW_S2sW4mJkJ9IMzdyhyVZr_a-KB0IgQf7-9mY3o 95
adavar/processing/json_biomarker.py sha256=eqGtjan052Nxmv3AlesE9iQcTAOaazL2kSYcUckmzkg 2080
adavar/processing/parse_http_responses.py sha256=Tp6ggOjlA0LTTodOlZIg0IfW7tcUS6YpaWF1LQ2fFNI 1172
adavar/processing/process_files.py sha256=oFpKVeTexf9uyTXyXy48K8pb6wbKXor1eMpDWbfvhcc 8517
adavar/run_scripts/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
adavar/tools/__init__.py sha256=h4NtFIqEJHSfTJCCHNrA7iErDF9pLAnfbdf1S4ow0-g 915
adavar/tools/biomarker_types.py sha256=Dqyl3QG59kA4lc_aScFkbJC98roz5KRr2AtkRYo4CUw 3562
adavar/tools/client_mgt.py sha256=HM2somfe3fhb2Gs85kF_c41o9hDuYpMeGRg5k1V1ir4 5971
adavar/tools/data_io.py sha256=5qkKNVrcyQQgAWmX5WhK-RKjSBeLcVmPpMcfY7nx2T8 6677
adavar/tools/data_structures.py sha256=O75Qu1j9JvNyqXt3hPKVXXmvgeUTiIjmlu3iyDbaF1Q 2221
adavar/tools/dataframe.py sha256=EsiP8c8Ewdv1zp6dRf1w2AX-mXjd8qZUwPy-fJJSJ5g 1103
adavar/tools/format_requests.py sha256=AcWSgL3WvEQeMHm2Qadyhm7M4oR1NPtnoewZuh8qDuY 704
adavar/tools/hgvs_re.py sha256=i8J05Us0Az_6DfLCrteMdDAyJgOjjpSk2ijwcdiL2q4 8906
adavar/tools/identify_biomarkers.py sha256=Zzy6LpKgG0b5mTJpbXeiF_rubiu_6rPsIMPGoQW3_N0 11513
adavar/tools/json_mgt.py sha256=xPcOaFlOHE57Gs0DfzwYNVL9YoCM3MlnX1IlSYJsxYs 3050
adavar/tools/liftover.py sha256=z23UzbvzL7QfEjdG0BZ4F-Rd8Wnf5VMz6_i5cIsJ9ZE 1820
adavar/tools/log.py sha256=RcYacQ9GuUj2A_u_xAGfRisO04DFHVe07OUmfH7Vczk 764
adavar/tools/maf_mgt.py sha256=HirN3D9ziG6cfh-3zFPF6mwguNEDk5_pr5EvVgVPJhg 4962
adavar/tools/module_requests.py sha256=Z31uZjRsd_tNQraIi5uxZtUxnE6h-C3V3RErCmfAUKM 3910
adavar/tools/normalize_variants.py sha256=p2NCNas_CAuAZJCd-a3rQ73q2onosI8TPUJdHT92lAY 7631
adavar/tools/parse_args.py sha256=YDArdoY2qq8JpQ1ZSnGKfo91OGgkmS9WodPFn6aioZ8 2141
adavar/tools/parse_cancer_type_labels.py sha256=GKEiTeTWkdceMBZ-HxJ3syTnYefs3WLk5Pq0HP8Dhyg 204
adavar/tools/parse_dataframes.py sha256=3qRqgvCdOtCvMTQu1OcOYnvf7ar6-3L4jhL6-9TpNlQ 21608
adavar/tools/parse_drug_names.py sha256=YeybS4iJnbL1ZW_TUMZyxypHHw9IlTdfdd08W23gwUY 2594
adavar/tools/parse_genomic_data.py sha256=H6pLd0CkQrhVrk6RtE47NaY1y77ZIS-UKPln9ukrQX0 6430
adavar/tools/parse_indel_locations.py sha256=aJeoDu8H9OVuyBNRHsa9A8vVEB0h-uLejyd4aAXe3w0 338
adavar/tools/parse_vcf.py sha256=B1Ezr60BYBa8zEC244SCGm7GDWI7p5ui5qtN3C8Tw28 10277
adavar/tools/preprocessing.py sha256=yvdPeJzgiW6741EZHXp-mlHtbyBl9IjnzHFGmndZUpc 24290
adavar/tools/reference_genomes.py sha256=TaZT6utmk7eebIt00k2pW3JQ9TeghzGGJ3GdmGeK1A8 1182
adavar/tools/sequential_annotation.py sha256=ZJQZKVY-wj8SNeE6yWT72UafJ9DWDBESyhq9IbQkYaw 11677
plots/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
plots/tcga_single_patient.py sha256=VuM_H2gRRrA5-Ilo6KXo00MfIGFeVULTE8tD_6XBCmE 25
tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/test_client_mgt_functions.py sha256=KaogeLo8VyHgrEVtE_fH6q5bBoKBz_SyjfejVdmE5SU 241
tests/test_preprocessing.py sha256=96FlqDLESknUafbymCauZgbO6srO2c_6NVaxFup9vgw 2068
tests/test_result_export.py sha256=GtjN8ioVbdNIz_u1QFcboj0a0bE2rZU51PAuURwwDF8 76
tests/test_variant_filter.py sha256=mExCiRKZ7bLX7PenpmjBylYdXgmqfaD4sDXRsagUnGk 5814
tests/test_vcf_to_json.py sha256=LtNidWnB0ARhqYykHyqjzS3PK5HKl8yEBmYecXxbyOU 3364
tests/annotation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/annotation/test_blosum_client.py sha256=ef3NDalIeo50-UxILX5mWCOG9GI59oAObfmPysZQARA 1344
tests/annotation/test_liftover_annotation.py sha256=jLuO0EKg2_X46o9VQhGkGH9_lbKg8Uolr7e9QvcOpuA 4175
tests/annotation/test_type_recognition.py sha256=Z4JCzEnP-3iQUQTGFkEfG2OZxj4BAJMoPa853EdS1eI 602
tests/formats/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/formats/test_bframe.py sha256=Bc6dziD651HQdgRb64GpjpGUmUrwt5oi-WqyOnGyns4 173
tests/formats/test_clients_read_excel_write_vcf.py sha256=o00AYGlCvUwFyuWhd4c71NWqdtbILM3CFO4vYkFxChg 653
tests/formats/test_clients_read_json_write_json.py sha256=vfB87MBxdsbL10Mzxjo1-PrJFZomgJjzG_DuOuhoZ2Q 25
tests/formats/test_clients_read_json_write_tsv.py sha256=oXCi61l_S3O2ZPySR7r_7CHXO2Mil_azC1mdMlW_nA8 26
tests/formats/test_clients_read_json_write_vcf.py sha256=oXCi61l_S3O2ZPySR7r_7CHXO2Mil_azC1mdMlW_nA8 26
tests/formats/test_clients_read_tsv_write_tsv.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/formats/test_clients_read_vcf_write_json.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/formats/test_clients_vcf_read_vcf_write_vcf.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/formats/test_readers.py sha256=KaogeLo8VyHgrEVtE_fH6q5bBoKBz_SyjfejVdmE5SU 241
tests/formats/test_avf/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/formats/test_avf/test_avf_reader.py sha256=4gS4FXw1Gt3bLjGrk-U0nqBGB9FTE_JZnLaUvlvr1lc 1078
tests/formats/test_avf/test_avf_writer.py sha256=8hJ5lM84iU0dALygPnQN8lh01Uvz67onuoHG2NyAtZY 711
tests/formats/test_json/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/formats/test_json/test_json_annotation.py sha256=C-px9QSR1xZ86ccZGls0CDt1r4i8XXeCGl93Plju29A 942
tests/formats/test_json/test_json_reader_writer.py sha256=zyRBowTDl_RtohTeolvM7i_wRcX2bZaZsQ-8Z73DL9s 1214
tests/formats/test_transformations/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/formats/test_transformations/test_txt2csv.py sha256=lKA4vkmiYkhEbz2sKm-bO5ZcsQVg67jcFm5pEYkaXl8 674
tests/formats/test_transformations/test_vcf_to_csv.py sha256=-2xlD9iUXcskmDb7YwJFhFmsUS98pCXFhknMe7oEmu4 518
tests/preprocessing/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/preprocessing/test_aa_exchange_biomarker_detection.py sha256=EbqagYYTCstrvuAxTA-Pz33RQs0dGguFP85C4qpvfoo 635
tests/preprocessing/test_biomarker_type_recognition.py sha256=ZNfFzAQ3e52oZ6kzYkLXDbDlO0j_S--p9KzP6b0-4Sw 3800
tests/preprocessing/test_biomarker_type_recognition_indels.py sha256=bCIrI2J8WaPS3jXsKTESJJ91BZ-2BtUbcvDLLT4fpVs 4865
tests/preprocessing/test_biomarker_type_recognition_transcripts.py sha256=ueqGR0z3HCrTiavwFrSOmmNEyk2APdqJMwuQrWESBpA 773
tests/preprocessing/test_gene_request.py sha256=LagDwGFmg2I8iIp47VlTOIazDXJ9LSxsiprmXa5DIzI 404
tests/preprocessing/test_multiple_biomarker_requests.py sha256=sTGSm98unC77Gen6tKGVlNV91FZzD5sRqPVHIDZ1e9E 497
tests/preprocessing/test_preprocessing.py sha256=ULZydZk7SOq-464I6GLGCN7L73aH7H4ADipSxv4xBA0 2106
tests/preprocessing/test_protein_to_genomic.py sha256=z6GAei3jbOsKT-8vKarfCrkU4U5XZrptyt2LJQ9rsYs 537
tests/preprocessing/test_request_type_identification.py sha256=p0UfrIG9tB-y6EJnwhf7E2sQnuCcrhpFzKJVP3dBY7A 1306
tests/preprocessing/test_variant_type_recognition_proteins.py sha256=CjmFySveL38GdTI7GzvOg4hK6PEACwAq48MPIMKWjgw 362
tests/processing/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/processing/read_files_with_mapping.py sha256=zn6ejX3h0uZf_Cl1MUStLrSaMyBhtVUUu02Lz4ylUNU 1609
tests/processing/test_generate_biomarker_frame.py sha256=ko1hrRxBHahxJxStJrxU7CFNbHwhkEZSVdjMD7UAJ5c 591
tests/processing/test_get_processor.py sha256=M-X-jo5eKqxM99639vBQGmImaY7KVdmRqL0-urdIuIo 568
tests/processing/test_load_bframe.py sha256=5qyzIJRekz28HVjLjjjq0wSMyhzvE2aupCWJRMwzfW4 451
tests/processing/test_processor_writers.py sha256=m8HonJuOGQanxJMLKaaGBOpgQEfz9u4QN7cJOK8u3tY 1495
tests/processing/test_stream_based_filtering.py sha256=oc6CESGE2brAHk0FAP5aKfdZOsem1xMw5mySYvwoLT8 494
tests/processing/test_stream_based_liftover.py sha256=Vz2je17c6ZVxRjAwf56GdsOj7ri8LQFwrHR3BhADCc4 1040
tests/read/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/read/test_avf_reader.py sha256=jwJqVygk4sdElS36J1Y4shItvNoDQFxuMo5IEXzXWw8 1072
tests/read/test_csv_reader.py sha256=yjXCGVFuIzbc45y-PltOMCLK-bhbhWj547rbXEKCqlA 1958
tests/read/test_dragen_reader.py sha256=dSZogReTWxBttYlxBBdT-fCfzXRaAeaWOy3Te-U1SLE 1187
tests/read/test_fasta_reader.py sha256=8YSx1NWPwWob9SHhqNQNzJqgeg00XFNp-Exf5y7B6A8 441
tests/read/test_gtf_reader.py sha256=KYKcHVomYeODQgF1WiFX0K_ag2oZxid5JrgkJefTrqc 585
tests/read/test_maf_reader.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/read/test_tsv_reader.py sha256=qU3voMvWTpmV07EtKheDYIhlIYkZ-IHlo3Wlh1Afmf8 821
tests/read/test_txt_reader.py sha256=86th-YZe1stqtMiRKFbeTZIcOAg3CZzvUIykX1j07MU 575
tests/read/test_vcf_reader.py sha256=isQEOY7VoIVyMqdi-va1MctoMC7QxZQJ3r8YS9Agvug 1948
tests/read/test_xlsx_reader.py sha256=h3MRjkg_hgE2e_RprSGXebaKSuWxBBpmGVdrk1c4xbI 427
tests/test_onkopus_clients/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/test_onkopus_clients/test_file_based_onkopus_annotation.py sha256=hhNcNIsvcJeRZyc0bwscf7IRJY6u3qY0tx-iO1396Go 1377
tests/test_onkopus_clients/test_mtbreport_file.py sha256=4BA-G9ug3P2N2_m5-B7YbfnH1KHE5K5RKcFGyT2T5O4 268
tests/test_onkopus_clients/test_onkopus_io_functions.py sha256=BFvdTG8dlSGMNqfNRUdrFUZjk6RrNlcgzFfAqs2z1eE 249
tests/test_onkopus_clients/test_single_onkopus_clients/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/test_onkopus_clients/test_single_onkopus_clients/test_aggregation_client.py sha256=nC3vEhxTl7lag99fDbQHvt40J5WTjoMZ-T7d73raL1k 1415
tests/test_onkopus_clients/test_single_onkopus_clients/test_all_modules_client.py sha256=wYNj5bADJYMQmmO9mA6huBV-ZunJzR5xq14WUDxuTqc 387
tests/test_onkopus_clients/test_single_onkopus_clients/test_alphamissense.py sha256=14QP9ILRq2zoZphfeBVk9K_LSFlMc9W_p21zGlN-xLQ 420
tests/test_onkopus_clients/test_single_onkopus_clients/test_annotation_clients.py sha256=eZlA61pJ5mR2C00LiDFpb5J2AKOoJ3I3SCeJKGZxL-A 7599
tests/test_onkopus_clients/test_single_onkopus_clients/test_civic.py sha256=_yu8W2d9eH01iEoSylvZ8JWjUpNXv2c67EJjkJlNO8w 856
tests/test_onkopus_clients/test_single_onkopus_clients/test_civic_gene_client.py sha256=SClHmmSciZBkElsPkEmE2SxHmrvqJZSGr29sg1UwldQ 366
tests/test_onkopus_clients/test_single_onkopus_clients/test_clinsig_tsv_writer.py sha256=Mk1Sg0hitHUIauKDk7JJ10R9_qFR2NtoEQ6WrRMd_54 1339
tests/test_onkopus_clients/test_single_onkopus_clients/test_clinvar.py sha256=iwZCuVuDFOPfVKN6Xx8nv6ggPqH77j9ibaXRuqBbTaQ 853
tests/test_onkopus_clients/test_single_onkopus_clients/test_dbnsfp.py sha256=znLUQNyhhe88jRV7uSOBk981aVt3mKIpUo6LJDSUQcU 1160
tests/test_onkopus_clients/test_single_onkopus_clients/test_dbsnp.py sha256=4NiLC7iFoh73ggvfiXWEvPlQWF4MbTDCoPXATPzUaYM 1140
tests/test_onkopus_clients/test_single_onkopus_clients/test_drugclass.py sha256=pabDtuXjgzVbR5wCMRVZAEpl0N1HAFJmQqGaydIjcq0 1042
tests/test_onkopus_clients/test_single_onkopus_clients/test_gencode.py sha256=k9Bhc6TErCenZB-14M6-2aFfInLKy22tb3FWqgZh-Es 599
tests/test_onkopus_clients/test_single_onkopus_clients/test_gencode_gene_name.py sha256=Qr-Z63FoPCZ0eIr_9vO3RURtY9yTCm7t-OseVramluE 501
tests/test_onkopus_clients/test_single_onkopus_clients/test_gencode_genomic.py sha256=yzfoji4z8ls9A8MaMmLd-MoAtrhNFYym-8l53j2ljxo 1178
tests/test_onkopus_clients/test_single_onkopus_clients/test_gencode_mane_select_transcript.py sha256=NRBhXe7nvv5IEGAxI65Xdp7reIotNTGpCieoeertZmo 655
tests/test_onkopus_clients/test_single_onkopus_clients/test_get_drug_classes.py sha256=lZ2oHuVFMWt73Sskvbq-QVEolcGuoRWs65dfPkGF-OE 1328
tests/test_onkopus_clients/test_single_onkopus_clients/test_liftover.py sha256=aJcpXyhNV_oj_i5bllV1qqgOBCG6XbDdLc16sHRu7HU 743
tests/test_onkopus_clients/test_single_onkopus_clients/test_loftool.py sha256=qPpN_edcmXQhuARN7WIOsyYtNNHzcQAaJnOCZU6Ul5k 991
tests/test_onkopus_clients/test_single_onkopus_clients/test_metakb.py sha256=23e5CwAp7-d40SyCPmkuTGGteMkcI9NUyvSFEwnwcbk 961
tests/test_onkopus_clients/test_single_onkopus_clients/test_mvp.py sha256=SHeyx8Hq-pDn7ADfyYwCAd69w737R3zi7e9Ho5FzZnI 1342
tests/test_onkopus_clients/test_single_onkopus_clients/test_oncokb.py sha256=EUzzgoFc8AQmm0qok9MFCjOHocGhPdxSg8ZYmV8HGZc 910
tests/test_onkopus_clients/test_single_onkopus_clients/test_preprocessing.py sha256=8BNLJ1GhUN4qpzWNhZeNwA2XxwASxRKoIL_yC_zBHTU 288
tests/test_onkopus_clients/test_single_onkopus_clients/test_primateai.py sha256=2xQ4H9DbzkJR95oc37OBmSakcYHDeVcU18xYJP1SjvM 1199
tests/test_onkopus_clients/test_single_onkopus_clients/test_revel.py sha256=k2OFTv6gV-6fI4hguZQpsTk1hpuCS7B_ay0-RCbaRl0 1103
tests/test_onkopus_clients/test_single_onkopus_clients/test_uta-adapter.py sha256=MNqOLnjqhv17_WzNvxcXM2htYvUju_aSliMRsaHuF-w 1229
tests/test_onkopus_clients/test_single_onkopus_clients/test_uta-adapter_gene.py sha256=aqklh1ngtjqcbzXxoOVsTWnXnriMtHhuuOIKJ2UUCDk 1378
tests/test_onkopus_clients/test_single_onkopus_clients/test_uta_adapter_protein_sequence.py sha256=ynHtJHLzut_wN2ONEhR2-UOI2bnBsUQM-mztP72JiLw 916
tests/test_onkopus_clients/test_single_onkopus_clients/test_vuspredict_client.py sha256=zkrQOAngu73d1-KLvisdAJmVBUNpeDzh1LxrdjhWCLU 534
tests/tools/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/tools/test_alternate_alleles.py sha256=kiDxcuq7UGctp4ku1wgVLaUZIreevzID3WC_-R0MSio 125
tests/tools/test_amino_acid_parsing.py sha256=OMfChzUQC7ibSOYLm6Mkq7Bq9JNboyjA7t7ZPiHuxlc 642
tests/tools/test_data_structures.py sha256=6tgf_MGbfsE9KtIpaX22SL006WXVJHrOqtFOw6cy6Lk 262
tests/tools/test_dna_normalization.py sha256=AV2bmvjTOsBwLjd8IYoa8-VqEWOWjkUscknRo-Q7TM0 2196
tests/tools/test_file_types.py sha256=e-SK6CBNXLlWqs7TX8ThCaOMo1Ahw9MabiDAqkJ_hZM 415
tests/tools/test_identify_biomarkers.py sha256=Qm2XQvfwzxFodBnDfBCw_yydlVSLdMNeOgvJBZEgHAg 2170
tests/tools/test_parse_genome_position.py sha256=Yo0409zGZbVFoAv04HCB2ruFvoj6ZDipM9vFN9DeaFM 208
tests/tools/test_parse_genomic_data.py sha256=7x_UfmAS4JRQaKq_Sjy5X-jbd8u2BTLFf-OYAnYzYG4 309
tests/tools/test_parse_indel.py sha256=cyK_-UkG9UwmvBxfdMzbkA2JMuyUmoFkFaBvG1UIspo 1112
tests/tools/test_protein_normalization.py sha256=pc4XAzgvYsEbcFJUAbt437wdupLYJARKKCNIsVbTOI0 2132
tests/tools/test_remove_duplicate_pmids.py sha256=zFZPzARJKOtxWWbURuhVfjdGvFjr4XJel5nw5dIMo5U 483
tests/tools/test_seqcat_gene_to_genomic.py sha256=GjmRj6JzSvj2qm6_imGsIbJqkHVYH72G2Y9_fVMmC-8 636
tests/tools/test_seqcat_genomic_to_gene.py sha256=JLNyE2tMuYsghFhXzepNqjWzjAFuvBXgIJaAimyhZk4 790
tests/tools/test_transcript_normalization.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/tools/test_wildtype_variant_filter.py sha256=vhUTzqfC69gy9ao1WsEUEWVmpN7wn8t814SeFfYbLKE 934
tests/write/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/write/test_avf_writer.py sha256=V-KoQsCab2JiBJL65RZ5Ilgb6TKvTJDGPLheErjFa5s 705
tests/write/test_csv_write.py sha256=rhrmz-xSyDMTeDGOmgJZVCRp2zCaO1Pxasr6q-a037Y 2802
tests/write/test_tsv_writer.py sha256=ED5musu6hh8QUwos7Kglr6nz78xapUkNP5XeMi_DImw 1116
tests/write/test_vcf_writer.py sha256=V6ephNZYsal4_E2YxbOlLhLlPz-5uQIYxeKBISriuPA 10896
tests/write/test_writer.py sha256=Hw9Vp8N6rkJyCirl8DNiUXa9P9Tmgv5RCdBcPE86vqg 2333
vcfcli/__init__.py sha256=6NqqSx9z_gVlM44_Wdb7vecG8XjYLeflvF6_ln62t2Q 508
vcfcli/clients/__init__.py sha256=-4NMlX_RIP1Je53Y1JiuXnc5EykJ92KSchTlNO8p7jY 225
vcfcli/clients/client.py sha256=Fe9o1PaU5ks3gaf_mHIYmJCRfakDFtSM7-Kegoe0SZo 164
vcfcli/clients/annotate/__init__.py sha256=OFtQ-k770CGOXO0IXfj9vGL17hi4RkX_xT8gfiCiGio 96
vcfcli/clients/annotate/blosum_client.py sha256=XPBDSnNya_G79cwIA4wb-HSNN0FcT2TmAOLqHfVlqCY 1303
vcfcli/clients/annotate/liftover_annotation.py sha256=kgh4sTEZ4R9GKvhPPWoBSkLFQ0XIzKi9yWrcLZWVIlo 5284
vcfcli/clients/annotate/type_recognition.py sha256=xR1RSEscvEorAMItL_cIcZ2crYDkAB9Pvpl-uOTQto4 1291
vcfcli/clients/filter/__init__.py sha256=3jfPry2gjbIpHGvkdKcos6MhpoSZ7zxM4xhwE4k-JEw 170
vcfcli/clients/filter/allele_filter.py sha256=79PeEqYz34eCgKaVuivvhaqKcCIayC_vAGthJ1Oc_0I 669
vcfcli/clients/filter/chrom_filter.py sha256=obXrJ1auhFGKdkcmiTJXFTlViXHtg2UQI-FkAtrI9Ak 678
vcfcli/clients/filter/filter_feature.py sha256=nMOzJiAahVNugqbjjEfPIqk9pEjrVrIOv558TAFpZQQ 1936
vcfcli/clients/filter/nan_filter.py sha256=FGu1wNQ75TeluSTk71vHOfY9PMjJ_yFaegGiC60o53E 1069
vcfcli/clients/filter/type_filter.py sha256=mao0oWYQHMVzi72e-5O0sAtz-BMoU0b5c_ZIr5wyhaU 768
vcfcli/clients/filter/variant_filter.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
vcfcli/clients/network/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
vcfcli/clients/network/rest_client.py sha256=etqTJZHfUTc7KQHyrZNeSpiqHEhSV_N27S0v4RjK1og 389
vcfcli/clients/plot/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
vcfcli/clients/reader/__init__.py sha256=ynTKN6Zms9oo1Gm474SZsv01dOyOI-ppJYRT2xsoRuY 294
vcfcli/clients/reader/avf_reader.py sha256=oLftNZnQ1d3pyFWmNyxcxL9i5iK72UcFvfEMYYKeD4c 1840
vcfcli/clients/reader/csv_reader.py sha256=AKFAG2wzBPigT4t9-LieTrWe_wjp3jI29GjLyDLJMJ0 2279
vcfcli/clients/reader/fasta_reader.py sha256=B1J-lmaNLh-GKn3U56aJaHaiRZwyxVLMV033eDVHWX8 2010
vcfcli/clients/reader/gtf_reader.py sha256=lbeH6D4KSGM9bLDgdobK7xzyaq7r5mlOQJbf91Iq3nc 6105
vcfcli/clients/reader/json_reader.py sha256=f840i4cVzosKv2B4JzQuMIe98dbn-KUkbAiSeOwyYPM 813
vcfcli/clients/reader/maf_reader.py sha256=jhb3Z1HJip3rUlM053MICPy5mXwlIEHGuA35Mf_wGOM 4112
vcfcli/clients/reader/pandas_reader.py sha256=DRGFG1Bu5dsoeRF2sN61kMvKayBgaPydVGx9OC-_oME 1173
vcfcli/clients/reader/reader.py sha256=dAeW6UNMkVONbPn4vxHocSctlGMHehxwR6KHhMwxNiU 471
vcfcli/clients/reader/tsv_reader.py sha256=SAYJzTexhdH4k6qBLf2ivYYDrTqstZcb7SoGrWBKaLM 1891
vcfcli/clients/reader/txt_reader.py sha256=WAfxmxdXiZH20bCISb4AkzKo3myAXIQo70CsRfyDoKw 5499
vcfcli/clients/reader/vcf_reader.py sha256=UI1H3AsSfe14P7aGSUUoPELEFRKjTlrr21Tzk6ho3SU 6597
vcfcli/clients/reader/xlsx_reader.py sha256=4UlQpdxG0rPXY8ds3IaUb9swdfls-TLgrd0fbQq_RSY 1902
vcfcli/clients/sort/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
vcfcli/clients/transform/__init__.py sha256=ltj0_LikVaCOKIBxfxqem8sK_d3AdjPOBtjawlzd83w 57
vcfcli/clients/transform/dragen_to_vcf_client.py sha256=Y_Fj09-DvIp2eJfHnGcQWr7WhH75HZU-YFh88HB9gP4 2823
vcfcli/clients/transform/json_to_vcf_client.py sha256=SJW-3sCBymPeKQ5oOHdE-ZCE7WyHeiAMM4A5fhR8TBg 266
vcfcli/clients/transform/liftover.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
vcfcli/clients/transform/liftover_client.py sha256=ijIe89Nc_7CPFPSST-khNN_WVj0d7GY47bAaW_uZ4Do 5587
vcfcli/clients/transform/normalize.py sha256=Q4H24rfkPI8Zx8mola-5aqGTOO9355xzfrnQz2E3vkI 1078
vcfcli/clients/transform/vcf_to_json_client.py sha256=rjEXdkHxDI3iE6frJyMed7naUXx0xrKYod5JitiqC7o 761
vcfcli/clients/writer/__init__.py sha256=yuueB70ODmWy_2opep5PesEQGlhQ_WdFn5sdZoGr_fM 327
vcfcli/clients/writer/avf_writer.py sha256=hdv29okolLJDzLeBeomK-yRxbVkItulAgVYBg5KmX-4 1350
vcfcli/clients/writer/csv_writer.py sha256=g-Is1DknFXGSAT8qEzGjYOqvbeGpcM1unhjGbrLBtdM 8421
vcfcli/clients/writer/json_writer.py sha256=zuNk2WWUIZUnE4P4RgpkM6QuK0bPeSZf9rXRkj1ypLc 3136
vcfcli/clients/writer/maf_writer.py sha256=wMrw_F7Qzqa5_X0HeaeVeqLQ1pc82FcRoiLQwj-Ero0 2305
vcfcli/clients/writer/normalized_data_writer.py sha256=1zc0haGM8rSULgAYHG8d0g5j3figrHYoVSYbHJ2FIQ8 682
vcfcli/clients/writer/pandas_writer.py sha256=5lRrpvznX5h3ZOrWb-FpVsOWPIiL_oOlxwxRjzmHuBc 1711
vcfcli/clients/writer/pdf_writer.py sha256=gVy9o5LamlRpYBvj9gW2N3zT6qBx3ieCxJ7Va4StVRA 136
vcfcli/clients/writer/tsv_writer.py sha256=JKynoWEONHvlCb4qRblpaewU0mUdH5rD__t2kza6fVI 763
vcfcli/clients/writer/txt_writer.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
vcfcli/clients/writer/vcf_writer.py sha256=PGQKBiQam1dE68dYTxcHry4hySzI8yYEf0ksCYADZPM 8820
vcfcli/clients/writer/writer.py sha256=AsXFcSgNYjIomg76p6z0PyFmO4p_eiIplomwDIHb7N4 697
vcfcli/clients/writer/xlsx_writer.py sha256=joZqldvWrPN5c47qxkXe84kobheqKwdb5zQuyz1s1gU 1286
vcfcli/conf/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
vcfcli/conf/config.ini sha256=9DBfTpOdCTtSvKnxFE5jpxxYh-IfZdX8AVRiQ6rh1MA 518
vcfcli/conf/read_config.py sha256=uTx7t18tHhEBm7_O7yWtMyWVVXrjQtvNZzZZIjNLPpA 3992
vcfcli/conf/vcf_config.py sha256=TApZipjEo-0rdX67mhNM9p2pdK9RePhcr4FJNCarUcs 640
vcfcli/onkopus_clients/__init__.py sha256=mhyP9uD4crV7NF58_K9y6WYPxFE9kHc41Z3Zg1j9R2o 698
vcfcli/onkopus_clients/aggregator_client.py sha256=j8fl8VfsuseWk0GKnOZcoUGTyEjZ9A4FzneuKGhbC2g 1449
vcfcli/onkopus_clients/biomarker_recognition_client.py sha256=grZ15LH9aoJHn31wxjRF5mG_V97KBPKaCiSzvNJSMEQ 368
vcfcli/onkopus_clients/ccs_gene_fusion_client.py sha256=HVca6LIfQRIZkV1IJotx0yWsgP75IdYw4fsLy920omI 1326
vcfcli/onkopus_clients/ccs_genomic_client.py sha256=0O6jvps0sb44ouM64tmwPpYU0QpbUvSKR5DCUl8LoUk 8287
vcfcli/onkopus_clients/ccs_liftover_client.py sha256=4ssuMJWIT9stIQdkSdrIISsjNAWs2yW3_3aYrpgoce0 6671
vcfcli/onkopus_clients/civic_client.py sha256=ZG79bSp4cBP9pEMqfWBYkQDRCemPDL8FXPmGg29pTuE 3754
vcfcli/onkopus_clients/clinvar_client.py sha256=QCHi302VKKdH0YrBLBSm1BIzV90aJHT5nzS-rFamwvA 4017
vcfcli/onkopus_clients/dbnsfp_client.py sha256=qxPua45qVZ3SlSVC2cLoihOqpMmc4abnAXrWfg7qxxA 9482
vcfcli/onkopus_clients/dbsnp_client.py sha256=XPaHSGAfcKmfqPGH3kpd4mlHvIdPLkNnDEXs_SvRY8o 1758
vcfcli/onkopus_clients/drugclass_client.py sha256=072utsivZ2Sl_hg2aVnF-fz3MwVjJxqPhrLEbh4EQwM 8533
vcfcli/onkopus_clients/fathmm_client.py sha256=hZLvesSiLDbvCKh1jstpO3jlLj2jt-hJJAhu5w5aMYM 2324
vcfcli/onkopus_clients/loftool_client.py sha256=Vg4IrCzXVHsOOCvmU2ZcRZaygBH6ug_V3uQbqGHocXc 3016
vcfcli/onkopus_clients/metakb_client.py sha256=4JcTzsaRIlrHHh0oaN3zHY4J-WZN8qTco8plyH0atUY 3997
vcfcli/onkopus_clients/mvp_client.py sha256=eDaz3EscE2s21Esu2Zl3LKer40KEOJ8v7CyPqU6XxDs 4679
vcfcli/onkopus_clients/oncokb_client.py sha256=2ew0WXdD1qMMlG1hhyb4exk55CHso-mJyvwOP1qoN4M 3304
vcfcli/onkopus_clients/primateai_client.py sha256=JlBSwFRY4zttNWcN1OsbOw-bCXnd4yZZoGRb2jQM17Q 1748
vcfcli/onkopus_clients/revel_client.py sha256=xJO7xTovV2wwOqgNlzLR3fgsdHTlGOhmElsFZTEQyVc 3349
vcfcli/onkopus_clients/uta_adapter_client.py sha256=hUkXmdPBGkb0qCSPo05QfV7XvjrhQG1IC022bTFIgsA 5605
vcfcli/onkopus_clients/vuspredict_client.py sha256=mOsFmR4Dkz8_YUSHIOtLSsiKzjOXR8V0uAlfRw-Syfw 7213
vcfcli/onkopus_clients/aggregated_clients/__init__.py sha256=raJ-D4aPojPeOAC2H7K51a0-lSbg5kFDoWa2viNrYYA 64
vcfcli/onkopus_clients/aggregated_clients/all_modules_client.py sha256=XIco7Hk5CtGafGOJqQB6keeY2ZyFxF1FKD6pnab95mc 377
vcfcli/onkopus_clients/aggregated_clients/clinsig_client.py sha256=oLx9N0jGUhcTCqXS0ZbGBPE9cmw5yHt2oEKvQnapBVA 1353
vcfcli/onkopus_clients/data_import/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
vcfcli/onkopus_clients/data_import/import_data.py sha256=_ciCApZPP2327PscjQl-0251ErpMUMahvgR8gYkIqNY 1260
vcfcli/onkopus_clients/onkopus_writer/__init__.py sha256=ABiuX09BuwRnITWeoKVRxwfBsdtUVydHd8B-tWVas94 34
vcfcli/onkopus_clients/onkopus_writer/clinsig_tsv_writer.py sha256=k6TggRBQ_2RPKoxpuH96Qp5qaxNnFHpDfzGi_sUUJvI 4860
vcfcli/onkopus_clients/processing/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
vcfcli/onkopus_clients/processing/parse_json.py sha256=Ujkxo4s4G04_ZqhDS_M5QHF_PFb3gFsqvqXpktFG9ks 1441
vcfcli/onkopus_clients/single_module_clients/__init__.py sha256=BAsRovFtpQvZ8N_0AcRk6rK40EnAFZLuibM9zM-40oc 322
vcfcli/onkopus_clients/single_module_clients/alpha_missense_client.py sha256=XdD04b68AyhB-9SETYGH_9iF_ZT0TSB94C0NTi-ehzc 1767
vcfcli/onkopus_clients/single_module_clients/civic_gene_client.py sha256=ZHmlNkwetk0YZqO2LHn2E6HDY-BPyEPAq5wKpXps8KI 2876
vcfcli/onkopus_clients/single_module_clients/civic_nearby_client.py sha256=9qnHsGHLvktmQstryxyQYZpdaJ5b2GZJ_FH3oKZ1WJI 2878
vcfcli/onkopus_clients/single_module_clients/default_features_client.py sha256=vmlbc3ok1ks7-9bbF7HryJY6d6Z3yYggBet2XpZGQVw 306
vcfcli/onkopus_clients/single_module_clients/dgidb_client.py sha256=iTltr5ielOdsDPDkMRBdoa5vDLBjDhiKYNmVnQhOxzk 3566
vcfcli/onkopus_clients/single_module_clients/gencode_client.py sha256=5LVdpjg0nT4WJKtJ7hM53Hyfaeh45E6tDg4UjpBiE-c 3603
vcfcli/onkopus_clients/single_module_clients/gencode_gene_name_client.py sha256=nSXouwyTwE090cwKIu-hn7g_OzgRXnrNPQUYUAy03L0 3184
vcfcli/onkopus_clients/single_module_clients/gencode_genomic_client.py sha256=kWkVBlnA-_nKxnWjK1Rm7JOYRwj3aAtG56nwwM3WO0M 4748
vcfcli/onkopus_clients/single_module_clients/gencode_mane_select_transcript_client.py sha256=cX1UnuvMytfQMBSKKDQqoNn9mJCXD8f-QGr5K9fJRkE 3918
vcfcli/onkopus_clients/single_module_clients/uta_adapter_protein_sequence_client.py sha256=pNQNyUB-syKYf2wOaH6ITWEsI1udbpra6tlbLqxPgMs 3867
vcfcli/plot/__init__.py sha256=OlT4RsMBCS80X0ViNddMLFGXaYhSHqDGqRkGTTspXsk 200
vcfcli/plot/generate_plot_data.py sha256=kXVZB6nis-hHnaLr9OEbKkmUjQquDIvbjCMPi5VqQ74 13657
vcfcli/plot/generate_plot_graph_data.py sha256=QocI7--5THyfAEhzF-39buzGBSZtFGGOJ_5UPpRSI38 4112
vcfcli/plot/generate_plots.py sha256=pOnRytaNILAEtNr71q3-H9gSzcFPiFbnnbVplDeSB8c 3240
vcfcli/plot/generate_upset_plot_data.py sha256=TuZ18QwtifksO_fY31pCpxNy7di_jVytmap4Rig2GSU 1243
vcfcli/plot/roc.py sha256=HKzoCTXEl8681tZR76kQDtEYKd0rOJZSitguUZ306tc 2485
vcfcli/plot/generate_data/__init__.py sha256=jrBIUoErf3n_WEPko1rXGXpanuDoV1EiyYVEdAguLtQ 209
vcfcli/plot/generate_data/generate_chromosome_positions_data.py sha256=hOL9Cz8KO1-7KU2e2rW6knAeyERJHpLdZAgw5NowGFE 1312
vcfcli/plot/generate_data/generate_needleplot_data.py sha256=0_YXOh4gK7x0oR4eIrVK8N3tW1d-JYJn9obP7f7l3aE 492
vcfcli/plot/generate_data/generate_protein_plot.py sha256=FFErlduyGgXgwOKFt28oZYkRUTMnpwXbFK88HWi_iXM 589
vcfcli/plot/generate_data/generate_radarplot_data.py sha256=rYnqbef_du0IiRA6sogFJfI1ebI6iB89lzhYpPUkpp4 5114
vcfcli/plot/generate_data/generate_sunburst_plot_data.py sha256=tKKdRv234y6BuM9onGCtbIlogFtfhFdMykSYxs_nsfk 19804
vcfcli/plot/generate_data/plot_config.py sha256=vGDGP6KhG3y0ZP3Y5euDGBtqVXtvv6MdjRQXl5LB450 2196
vcfcli/plot/generate_plots/__init__.py sha256=bymS1uq-RGfQ69OvIPq8oYLp2F6iZlu0gNqeMj-jFmg 73
vcfcli/plot/generate_plots/__init__2.py sha256=bymS1uq-RGfQ69OvIPq8oYLp2F6iZlu0gNqeMj-jFmg 73
vcfcli/plot/generate_plots/generate_network_graph.py sha256=MhRbmgsjBf6SKoolJc2vFtwhQxXqwnnLCzcrscpNduI 4321
vcfcli/plot/generate_plots/generate_network_plot.py sha256=I3gSPU5OlctoaLSRMFWGrMq-_deNxdsqKAvX0KlYJZk 5398
vcfcli/plot/generate_plots/generate_radarplot.py sha256=n4sGv-YbuMUiP4WFkt-G1Tc19lHpU0ZPmMRnetcaAWc 2925
vcfcli/plot/generate_plots/generate_sunburst_plots.py sha256=KsszDwZhyF0efwGRQUqUJr0idN5bY3Vogmkj8bB8i_E 13275
vcfcli/processing/__init__.py sha256=MVVOW_S2sW4mJkJ9IMzdyhyVZr_a-KB0IgQf7-9mY3o 95
vcfcli/processing/annotate_variants.py sha256=dHaf_Fy-9m9fMUrGJuqzyr3eiebH2UgaiWJpGzLUAEM 22701
vcfcli/processing/filetypes.py sha256=03lQ1PMGrPhtc02EDTF5OWd7TAGFFvOo08JPm1hfnrk 433
vcfcli/processing/fusion_request.py sha256=ucFRy1WTSu1NNe26SaJN29Y9UNrUOXqj46e0MtE3Tf0 679
vcfcli/processing/gene_request.py sha256=2LTfFEmlExhd3K8KDuF8NBvh5Ul7NLa6p5tYSG_lbd8 382
vcfcli/processing/json_biomarker.py sha256=eqGtjan052Nxmv3AlesE9iQcTAOaazL2kSYcUckmzkg 2080
vcfcli/processing/parse_http_responses.py sha256=H9RoO0HkXnlyXmRsoG3gT36eV8pmAuY-sWslmpdA6yg 1168
vcfcli/processing/process_files.py sha256=3MgO88GjPTjpapavm_xPXY8VXx5Ygw8drpdnjSyHFj4 8511
vcfcli/processing/read_vcf.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
vcfcli/processing/snv_request.py sha256=mj6SL7rg4pbI_ShEGPXhMSjF6tKsQYP5aFkzN90eJZM 6714
vcfcli/run_scripts/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
vcfcli/run_scripts/run_annotation.py sha256=vdEqHfQGPc86FBZrtjkRiPHF8Z1NjbhQ2q72vATvYRw 382
vcfcli/run_scripts/run_onkopus.py sha256=n_gv5tQfFp8TnWWuv44e5HXZBNSLYs3TqpGAHYJojfA 3865
vcfcli/run_scripts/vcfLiftover.py sha256=5R4MeoEkBa_lm3Gq-y3Ig57iY4e42HzSrBBPl83Ga3E 1302
vcfcli/tools/__init__.py sha256=2hyCq4r1dMKUqeNkrWyy-0mGlK6vVVt4riRm6cvyafk 939
vcfcli/tools/biomarker_types.py sha256=nqFcf2HuCM5Z-2BpnbHdwljSXxVAy-HgnFcXAXY20OE 3552
vcfcli/tools/client_mgt.py sha256=yPWYXi3C03aJ1suhqTNtryqksyaxH5oII8IsNdTAwz4 5973
vcfcli/tools/data_io.py sha256=8-_SpulN2_yXb_hozNp3urFuBr2eBcR1VLOPeDkIcow 6266
vcfcli/tools/data_mgt.py sha256=h1RSsb28bnbBZv-FevUknsBiI8bvLf0q_sh74g_R0o8 12745
vcfcli/tools/data_structures.py sha256=O75Qu1j9JvNyqXt3hPKVXXmvgeUTiIjmlu3iyDbaF1Q 2221
vcfcli/tools/dataframe.py sha256=ARawbpvXLU5nu6JxT_aeMfkoZW0EvbYCjQEYNumHk9g 1075
vcfcli/tools/format_requests.py sha256=aa1lwurTl15NxCuuxbXfrgOgGyLIf58GH7cVYwg47i8 702
vcfcli/tools/gencode.py sha256=GBv_rdM59rB4l03Rd5FjsP2rwIhacpqtM-rjIWVoypk 5694
vcfcli/tools/hgvs_re.py sha256=qjJRA8gVkR_EGsiTXyNDTZLtVcjIKFjrs9WDBQ6uq7Q 6988
vcfcli/tools/identify_biomarkers.py sha256=ahFGj668HGSW59IIyatNpgKY3u0BMgxsRX0GxBMKtzA 8367
vcfcli/tools/json_mgt.py sha256=OINGtK3t9NFpwVMHdyMREJ0lDzOUTRnujlItBXRUxCs 3044
vcfcli/tools/liftover.py sha256=z23UzbvzL7QfEjdG0BZ4F-Rd8Wnf5VMz6_i5cIsJ9ZE 1820
vcfcli/tools/log.py sha256=Jf3mKyN3FQMAWX7-I3ZFUFFNnwws_0rpvYoE_-K9rCE 762
vcfcli/tools/maf_mgt.py sha256=HirN3D9ziG6cfh-3zFPF6mwguNEDk5_pr5EvVgVPJhg 4962
vcfcli/tools/module_requests.py sha256=1RooaCjqILDYq3E4j4VCqBrNoJ1q2Dr2N39-Qzb7xMk 3815
vcfcli/tools/normalize_variants.py sha256=jD4p8DfeEInWcSzSl2H502040bPfBsD-VsyQ90XvyIA 5701
vcfcli/tools/parse_args.py sha256=YDArdoY2qq8JpQ1ZSnGKfo91OGgkmS9WodPFn6aioZ8 2141
vcfcli/tools/parse_cancer_type_labels.py sha256=GKEiTeTWkdceMBZ-HxJ3syTnYefs3WLk5Pq0HP8Dhyg 204
vcfcli/tools/parse_dataframes.py sha256=kOnSEEG2s_cw6_fjTEeTvPCUUuW-09oNfD1EEmMdbnY 21600
vcfcli/tools/parse_drug_names.py sha256=YeybS4iJnbL1ZW_TUMZyxypHHw9IlTdfdd08W23gwUY 2594
vcfcli/tools/parse_genomic_data.py sha256=PUqb8grrSn_7mxi9GLuD04ejNZ_DYfK1n78wZ4D0PM0 6428
vcfcli/tools/parse_indel_locations.py sha256=I6F4HNaAmPZDakCDeEvBOhDpZ2iAbe-TRo7Iwxe6Kks 334
vcfcli/tools/parse_vcf.py sha256=6mNDxlGTwLaFIvU4RQ6IIOKpHxV_hadcDxeDgkKz3VE 10267
vcfcli/tools/preprocessing.py sha256=gP0zwCU3bVXZlHcjsvFox1pSeRIjxWA9YhC1xBq1hEQ 22851
vcfcli/tools/reference_genomes.py sha256=TaZT6utmk7eebIt00k2pW3JQ9TeghzGGJ3GdmGeK1A8 1182
vcfcli/tools/sequential_annotation.py sha256=8xgytWQQHuLMDYTPDtfnOZ41dbQM4foJioqN5jkMzJ4 11671
adagenes-0.2.5.dist-info/METADATA sha256=ALKS4ym-5ZhGc_qqzAHat68MNaNa0zhX-z5Kkbcw3og 6636
adagenes-0.2.5.dist-info/WHEEL sha256=2wepM1nk4DS4eFpYrW1TTqPcoGNfHhhO_i5m4cOimbo 92
adagenes-0.2.5.dist-info/top_level.txt sha256=EbsFbT4MxSh_GazGJGBCG4XBUyE3_eg7sIWI1uhipbM 21
adagenes-0.2.5.dist-info/RECORD

top_level.txt

adagenes
plots
tests