aacrgenie

View on PyPIReverse Dependencies (0)

16.5.0 aacrgenie-16.5.0-py3-none-any.whl

Wheel Details

Project: aacrgenie
Version: 16.5.0
Filename: aacrgenie-16.5.0-py3-none-any.whl
Download: [link]
Size: 188118
MD5: ee94611084f03e2ee8f672594619df2f
SHA256: ed8f699213b606704ce0425cbc7f9149a60c3a64774149c7b673106c603dd6c0
Uploaded: 2025-02-20 05:03:51 +0000

dist-info

METADATA

Metadata-Version: 2.2
Name: aacrgenie
Version: 16.5.0
Summary: AACR Project GENIE ETL
Author: Thomas Yu
Author-Email: thomas.yu[at]sagebionetworks.org
Home-Page: https://github.com/Sage-Bionetworks/Genie
Project-Url: Bug Tracker, https://github.com/Sage-Bionetworks/Genie/issues
Project-Url: Source Code, https://github.com/Sage-Bionetworks/Genie
License: MIT
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Topic :: Scientific/Engineering
Platform: any
Requires-Python: <3.10,>=3.8
Requires-Dist: synapseclient (<3.0.0,>=2.7.0)
Requires-Dist: pandas (<1.5.0,>=1.0)
Requires-Dist: httplib2 (>=0.11.3)
Requires-Dist: PyYAML (>=5.1)
Requires-Dist: chardet (>=3.0.4)
Requires-Dist: pyranges (==0.0.115)
Requires-Dist: numpy (<=1.22.2)
Requires-Dist: pytest; extra == "dev"
Requires-Dist: black; extra == "dev"
Requires-Dist: pre-commit; extra == "dev"
Requires-Dist: mypy; extra == "dev"
Requires-Dist: mkdocs (<=1.6.0); extra == "docs"
Requires-Dist: mkdocs-material (<=9.5.23); extra == "docs"
Requires-Dist: mkdocs-open-in-new-tab (<=1.0.3); extra == "docs"
Requires-Dist: mkdocstrings (<=0.25.1); extra == "docs"
Requires-Dist: mkdocstrings-python (<=1.10.2); extra == "docs"
Provides-Extra: dev
Provides-Extra: docs
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 7806 characters]

WHEEL

Wheel-Version: 1.0
Generator: setuptools (75.8.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
aacrgenie-16.5.0.data/scripts/database_to_staging.py sha256=If2aiXiVY1tVgUwiTF5Edx2MtajBkzTiQXXA7qoOXKw 12302
aacrgenie-16.5.0.data/scripts/input_to_database.py sha256=xU79U22GtlAgNZvOR0IGjLP-JB7MdKd2jIUvTWlF35Q 7454
genie/__init__.py sha256=OVH96on_kYlQCu22Mfj9Ob7j2Gbp4OKeC8vNxNcjOLo 371
genie/__main__.py sha256=_15AP4rhEZf7eIwA0rP9yrQ83nZDoMd6Br_HwH9sNcA 5167
genie/config.py sha256=erSJVOgIP3KCx4sa5nlvZSUCbzg_V5CoL48XwTVx5cA 2188
genie/consortium_to_public.py sha256=REViwSPsZTYwaT3pIxk1PXLv16ZpDJjIKK_s8Nksh4o 13537
genie/constants.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
genie/create_case_lists.py sha256=G3fHP_RcRlCFIbqWdHgenrDSEVbcOoCb0vNfW39cv34 9703
genie/custom_warnings.py sha256=1cFA1B-FgT62TDAY4qUiGtGpON1Q6rNoKrhaC5mdTNg 206
genie/dashboard_table_updater.py sha256=WKJ0PekVBeobDXHmi_WeAQeyH5zmhd9WLD8v2baaZLQ 30853
genie/database_to_staging.py sha256=Jcx-ojEcGx_f0oaDgBxNsZz3jINbrA_n8eTntdmYgbk 72733
genie/example_filetype_format.py sha256=V5EeXeygSN_vhs6h2290raYwrsellGLG9omOefQfvZE 8819
genie/extract.py sha256=EwLG4Z5F1mL6qt6T0P1rVh9JdjHffyL8B2ENYaoyGqI 9915
genie/input_to_database.py sha256=YCKV-QnEJTwtI3ZIsbC-oGPZoPfpOhHATjXudfVNmj4 35804
genie/load.py sha256=fqVSCEk03rTYl11s5xeLpvvLoJSSmo7YakMMeC2oN2E 8624
genie/process_functions.py sha256=Ng0KN8-bnziLneROWqZX0p30cA3AB-9lD-5sDZhULeA 36138
genie/process_mutation.py sha256=7QjucSClsMb3jXk4AQKji59_R1IrdkPbhztY7mnznvY 15715
genie/release_notes_helpful_scripts.py sha256=VpEumu6yRvs2PrFEWTKtAabk1Wou4RKaSMtH-gq_bFc 6255
genie/toRetract.py sha256=rHaLPDuWDAavs9-bjWZxc1Wkoq2goNNNoHwB2b_Hero 3191
genie/transform.py sha256=errrOLP1EWIWPcctocij9d7j_MXqcU7feYWy9HHtc_4 3367
genie/validate.py sha256=6oVoQmCNkxE48cZRYP87NIVajcvjWonnVUMzOLy9piU 18266
genie/write_invalid_reasons.py sha256=4_bickLbCP_3mO8HtH45R60CY-1oJ7BONQMrylTAWPg 2674
genie_registry/__init__.py sha256=113UoF_FT4fmtFPz2CGvABzawRyPQ7oClENgCD0Se3c 753
genie_registry/assay.py sha256=OWTpVMtl78HX3TGGbph93MOIL5H-oAjexz0anDxvmpk 13618
genie_registry/bed.py sha256=Btmx8XLVGIMJcQ6X3QcCpE42vL6zWojGlnqeYtLYTc8 25216
genie_registry/clinical.py sha256=AvzckpI4kD4R1L3X7G-R7JMVyY6icgUlk5-rWmozBqE 48270
genie_registry/cna.py sha256=H_UqZY_okFFR98uDOwqgBucQ_gJ2-Uv6J9xE-ZjfIPk 8902
genie_registry/maf.py sha256=cOrw15rzDY-VfpDYH4iAFEPCXgYOX0su_2bSC41VMaA 20098
genie_registry/mutationsInCis.py sha256=KnkCc4IPtXAVZYjZ-2Jp9Ss0jzCWxOCekwLUQZlFVB4 4114
genie_registry/patientRetraction.py sha256=pKFqQWMNOn_a8Hx3jduC4Esm_z3ZA4UYxXXT8bXCauA 182
genie_registry/sampleRetraction.py sha256=3eQGTfX-1j7VkTFOUPjE8G2DfLteE3llIMBjGfGP6gc 1803
genie_registry/seg.py sha256=ff6mPkx9Byujh1TmpKMe4J_5Q8Dnrtc_TVNHAv7k604 3274
genie_registry/structural_variant.py sha256=qO231_BjFA-tEaYZ4Ph-Ck3fOdWoq_B5cWivyNUppuQ 9434
genie_registry/vcf.py sha256=b9jl7qBPwkykpp3k8-aDK5kBCNeSvSNJ8tD6MxpiT6E 8158
genie_registry/workflow.py sha256=UsV9CuB572i6_9PnLvrmfg3JVc2hndMm9HUgcXAge5E 578
tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/conftest.py sha256=g3G6lEM4ULzaRei5m0Xsfw8SjmDaDqAxL3I3rUUhmQ0 2894
tests/test_assay.py sha256=T3E4LOUEFwPxTb0dK90H4IE96jIC1HAgwk546pSCtR0 13508
tests/test_bed.py sha256=F3lbxVhDbzWpKVeuK6mrerWzcJu1a3IiPyd8U_CRnIk 16626
tests/test_clinical.py sha256=CjdQ0VI2joeEzzTjd4tuCdl-A7m9zrfSUGrfhCI5Euw 59802
tests/test_cna.py sha256=08OTjma7JOBC0x5uGa19_wVgQD9oUTigs7CfsZ0cEhw 4716
tests/test_create_case_lists.py sha256=wYJhneODKDXXpeo7hk3so58AieojGe0OcsHLN15mSww 6181
tests/test_database_to_staging.py sha256=6HS6WGa9-3bj0VWJXPy_-net43-wUUqoE46QqDrp3OI 30070
tests/test_example_filetype_format.py sha256=9c69HaS2lgKZvwehUCsV3L9mhBFSEbaP8bxzV2jrNSM 3359
tests/test_extract.py sha256=NkXPtWdgWvbl51IYgvyd_JTG_74YCSyZTNLeG2eiJa8 4170
tests/test_filters.py sha256=fxolBIznSMpL13FYyS7rZypEZmcLj0_luZvLLbMUUlo 9857
tests/test_input_to_database.py sha256=EIFd5QsJYtJu-qNb4GZsO8K_8_gQTmTMbPhDZPpJzAQ 38697
tests/test_load.py sha256=7PGWUHNMo6bIg3XiYuLMeULTdZMnAJ7wb7OofYGwges 4789
tests/test_maf.py sha256=1tMDZKJwVkJINSTLd-xRMMXUKGI8i4gF30y8SY5MK4k 21133
tests/test_mutations_in_cis.py sha256=cK7dDVe1xFsJlHGvzJ2LHatkRq4tSWwJzJ9Qq-GbiA8 4200
tests/test_process_functions.py sha256=pOUDhumdjHBcIhXXtntBwfiCCDGJkyALQkFvZ-12DWU 35921
tests/test_process_mutation.py sha256=Avaqw5C5XMNRStX882LZwMMnIDVNi-4JtuYjtk9l34Q 19379
tests/test_retraction.py sha256=dnteCnlrR0VDGJh2amYhhoi89LEnsWV7QAePCbRSLiU 2524
tests/test_seg.py sha256=JES3y6DNRRhNVKlHBQ86kssc-m8rlgc_-UHgQATfHHo 3463
tests/test_sv.py sha256=ehajPdsEdJYIzHp4FzXXmKsI1Bluz_ZDoSCSTyZ3HO8 6659
tests/test_transform.py sha256=GGAW-cNYg7WLiqmQhFzNhPv2vNcFuL2B9O_CHgpQDuw 8664
tests/test_validate.py sha256=fZZURGqg8ey1pJtuijc-CRUrhrgLnayyB9ns8gRwZpc 33354
tests/test_vcf.py sha256=6LsJRIp3sNc_mhhxCmTmbjC6j_SUIgh62A0t2D-zJg4 11302
tests/test_workflow.py sha256=lGx9k8hB1tftX_vrZZXFwsbQ7EisZFAJp38_AE2uPJY 599
tests/test_write_invalid_reasons.py sha256=Dl5vmX5Y6w_P4nDiEI7sP6OmzObGvWgbaGP5OEAT2T8 1750
aacrgenie-16.5.0.dist-info/LICENSE sha256=jdoEIJY-RbNrNcR1oXgv22_d1hkzpUL65-4iCqSY-co 1073
aacrgenie-16.5.0.dist-info/METADATA sha256=giyi0K6QtqpHp91F2Oqic_ZoE_cMJOMgtyLz1jifBy4 9498
aacrgenie-16.5.0.dist-info/WHEEL sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8 91
aacrgenie-16.5.0.dist-info/entry_points.txt sha256=iTb4t5vpj3O8WB5PrrsUM5fl-Y1Hkmt694jAtAuReWM 46
aacrgenie-16.5.0.dist-info/top_level.txt sha256=phfiybugaZ3jtGAdxgVJz2HoG8OWP8J3X7nseUb9RnA 27
aacrgenie-16.5.0.dist-info/RECORD

top_level.txt

genie
genie_registry
tests

entry_points.txt

genie = genie.__main__:main